Factsheet for VIT_01s0010g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75189	Soybean	nucleus	63.54	54.18
Solyc05g010610.2.1	Tomato	nucleus	58.64	53.19
KRH71031	Soybean	nucleus	62.47	53.18
PGSC0003DMT400050585	Potato	nucleus	58.42	52.69
PGSC0003DMT400022704	Potato	nucleus	55.65	48.78
PGSC0003DMT400004830	Potato	nucleus	47.12	47.73
Solyc01g010130.2.1	Tomato	nucleus	53.94	47.11
Bra038336.1-P	Field mustard	plastid	36.03	46.3
AT1G68920.1	Thale cress	nucleus	47.55	45.88
CDY45835	Canola	nucleus	42.86	44.37
GSMUA_Achr6P36210_001	Banana	nucleus	26.01	44.36
CDY33568	Canola	nucleus	45.42	44.19
Os09t0474100-01	Rice	nucleus	40.3	44.16
Bra004348.1-P	Field mustard	nucleus	44.78	44.12
CDX95974	Canola	nucleus	44.99	44.05
Solyc04g005220.1.1	Tomato	nucleus	39.02	43.68
CDX81575	Canola	nucleus	43.5	42.95
Zm00001d020826_P001	Maize	nucleus	39.66	42.86
KXG35834	Sorghum	nucleus	39.87	42.79
TraesCS5B01G248600.1	Wheat	nucleus	38.38	42.45
TraesCS5A01G250600.1	Wheat	nucleus	38.38	42.35
TraesCS5D01G258300.1	Wheat	nucleus	38.17	42.22
Os06t0275600-01	Rice	cytosol, nucleus	38.38	41.19
GSMUA_Achr8P24490_001	Banana	nucleus	34.75	39.37
Zm00001d005964_P002	Maize	nucleus	37.95	39.29
GSMUA_Achr9P18510_001	Banana	nucleus	24.73	37.18
VIT_18s0001g08600.t01	Wine grape	nucleus	33.69	36.74
GSMUA_Achr9P28060_001	Banana	nucleus	23.45	35.95
VIT_01s0026g01140.t01	Wine grape	nucleus	21.11	35.74
VIT_17s0000g05370.t01	Wine grape	nucleus	21.54	35.56
GSMUA_Achr3P10600_001	Banana	nucleus	34.12	34.71
VIT_01s0244g00010.t01	Wine grape	nucleus	19.19	33.33
OQU81018	Sorghum	nucleus	25.37	31.73
VIT_05s0029g00390.t01	Wine grape	nucleus	35.82	30.88
VIT_07s0151g00450.t01	Wine grape	nucleus	26.87	30.36
TraesCS7A01G211900.1	Wheat	nucleus	27.72	29.55
HORVU0Hr1G020200.1	Barley	nucleus	27.29	29.09
TraesCS7D01G213500.1	Wheat	nucleus	27.29	29.09
TraesCS7B01G118800.1	Wheat	nucleus	27.29	29.09
VIT_17s0000g00430.t01	Wine grape	nucleus	21.54	28.94
VIT_08s0007g07870.t01	Wine grape	nucleus	21.96	28.3
VIT_04s0023g01930.t01	Wine grape	nucleus	21.54	27.6
VIT_03s0038g04760.t01	Wine grape	nucleus	26.23	27.15
Os08t0487700-00	Rice	nucleus	19.62	26.82

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ProteinID:CCB51156	ProteinID:CCB51156.1	UniProt:F6HGF5
EMBL:FN595754	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000210909A	ArrayExpress:VIT_01s0010g00740	EnsemblPlantsGene:VIT_01s0010g00740	EnsemblPlants:VIT_01s0010g00740.t01
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:15902606..15906238

Molecular Weight (calculated)

50498.5 Da

IEP (calculated)

6.064

GRAVY (calculated)

-0.574

Length

469 amino acids

Sequence
(BLAST)

001: MDMSDKDKFE LEKRSGDSLN YHSASMSSDW RFGGVCKGDL VGSSSCSSAS MVDSFGPNLW DHPANSQTLG FCDMNVQNNA STSSTLGIRK GGPGSLRMDI
101: DKTLDIGWNP PSSMLKGGIF LPNAPGMLPQ GLSQFPADSG FIERAARFSC FNGGNFSDMM NPFSIPESLN PYSRGGGMLQ QDVFASNGLK SVPGGQSQKD
201: EPSMAEISKD VSSADPEIDQ VKGSPQQPGE ASKDNPEIQH KGDQNPSSVP SKNTGKHGKQ GAQASDPPKE EYIHVRARRG QATNSHSLAE RVRREKISER
301: MKFLQDLVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRLD FNIEGMLGKD ILQSRVGPSS TMGFSPETTM PYPQLHPSQP GLIQVGLPGL
401: GNSSDAIRRT INSQLAAMSG GYKESAPQLP NVWEDELHNV VQMGFSTGAP LNSQDLNGSL PPGHMKAEL

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.