Factsheet for VIT_01s0244g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	30.37	33.88
CDY45806	Canola	nucleus	35.93	33.11
Bra022753.1-P	Field mustard	nucleus	35.93	32.66
CDX84885	Canola	nucleus	35.56	32.32
AT5G50915.2	Thale cress	nucleus	34.07	32.17
GSMUA_Achr9P01040_001	Banana	nucleus	32.96	31.56
EES14175	Sorghum	nucleus	32.22	29.69
Os09t0510500-01	Rice	nucleus	30.74	29.43
HORVU7Hr1G055180.4	Barley	nucleus, plastid	31.85	29.25
EER99171	Sorghum	nucleus	30.37	29.18
HORVU5Hr1G077390.1	Barley	nucleus	29.63	28.67
TraesCS5D01G300100.1	Wheat	nucleus	29.26	28.62
Zm00001d021086_P001	Maize	nucleus, plastid	30.37	28.57
TraesCS5B01G292100.1	Wheat	nucleus	28.89	28.26
VIT_01s0026g01140.t01	Wine grape	nucleus	28.89	28.16
TraesCS5A01G292900.1	Wheat	nucleus	29.26	28.11
VIT_17s0000g00430.t01	Wine grape	nucleus	36.3	28.08
VIT_17s0000g05370.t01	Wine grape	nucleus	29.26	27.82
Zm00001d049870_P001	Maize	nucleus	32.59	27.59
TraesCS7A01G263700.1	Wheat	nucleus	31.48	27.42
Os08t0536800-01	Rice	cytosol, nucleus, plastid	31.11	27.18
Zm00001d031665_P001	Maize	mitochondrion	31.48	26.98
TraesCS7D01G264600.3	Wheat	nucleus	31.85	25.67
TraesCS7B01G161700.3	Wheat	nucleus, plastid	31.85	25.67
VIT_04s0023g01930.t01	Wine grape	nucleus	34.44	25.41
VIT_08s0007g07870.t01	Wine grape	nucleus	33.33	24.73
Zm00001d006110_P002	Maize	nucleus, plastid	29.26	24.61
VIT_07s0151g00450.t01	Wine grape	nucleus	35.56	23.13
Os05t0103000-01	Rice	nucleus	28.15	22.42
VIT_03s0038g04760.t01	Wine grape	nucleus	35.56	21.19
VIT_18s0001g08600.t01	Wine grape	nucleus	33.7	21.16
VIT_01s0010g00740.t01	Wine grape	nucleus	33.33	19.19
VIT_05s0029g00390.t01	Wine grape	nucleus	32.96	16.36

Protein Annotations

EntrezGene:100266054	wikigene:100266054	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ProteinID:AFM30926
ProteinID:AFM30926.1	EMBL:AM480410	ProteinID:CAN64154	ProteinID:CAN64154.1	ProteinID:CCB59112	ProteinID:CCB59112.1
UniProt:F6HWP8	EMBL:FN596277	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EMBL:JQ823168	EntrezGene:LOC100266054	wikigene:LOC100266054
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459
TIGR:TC58858	UniParc:UPI0001982A73	ArrayExpress:VIT_01s0244g00010	EnsemblPlantsGene:VIT_01s0244g00010	EnsemblPlants:VIT_01s0244g00010.t01	unigene:Vvi.7662
RefSeq:XP_002267465	RefSeq:XP_002267465.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:21581454..21584390

Molecular Weight (calculated)

30146.8 Da

IEP (calculated)

7.598

GRAVY (calculated)

-0.504

Length

270 amino acids

Sequence
(BLAST)

001: MAAFSQQSHH LHPHKNLRLD STIVPSMSAV FDDEKKPTTS ISCFSDDPVK KITHCSSMGA ELGAPGMVRK RKKADFEEER DVEEKKGKAE KKRKKKVVKE
101: VPSGFVHVRA RRGEATDSHS LAERARREKI SERMKFLQSL VPGCDKIIGK TLVLDEIINY VKSLQNQVEF LVGKLASISP MLIGHEANLD SSTLQSENLC
201: SFGPPLPSLL ACNSTQLNSY AETSLTSSFS LQQDHLSSVV SQNDGIILWD MDDQEQSLLD QYGFSNRYSF

Best Arabidopsis Sequence Match ( AT5G50915.1 )
(BLAST)

001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQEEGEEREN FVDRSGFNNN NFCSFP

Arabidopsis Description

BHLH137Transcription factor bHLH137 [Source:UniProtKB/Swiss-Prot;Acc:Q93W88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.