CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021086_P001	Maize	nucleus, plastid	87.54	85.71
Zm00001d006110_P002	Maize	nucleus, plastid	84.7	74.14
TraesCS5B01G292100.1	Wheat	nucleus	67.26	68.48
TraesCS5D01G300100.1	Wheat	nucleus	67.26	68.48
Os09t0510500-01	Rice	nucleus	68.33	68.09
HORVU5Hr1G077390.1	Barley	nucleus	66.9	67.38
TraesCS5A01G292900.1	Wheat	nucleus	66.55	66.55
EES14175	Sorghum	nucleus	59.43	57.0
Solyc03g097820.1.1	Tomato	nucleus	42.35	36.06
PGSC0003DMT400069568	Potato	nucleus	36.3	35.92
VIT_17s0000g00430.t01	Wine grape	nucleus	44.48	35.82
PGSC0003DMT400051137	Potato	nucleus	43.06	35.8
Solyc06g072520.1.1	Tomato	nucleus, plastid	35.23	34.26
AT5G50915.2	Thale cress	nucleus	34.52	33.92
KRH63842	Soybean	nucleus	41.28	33.53
KRH54121	Soybean	nucleus	41.28	33.24
CDY45806	Canola	nucleus	34.52	33.11
Bra022753.1-P	Field mustard	nucleus	34.88	33.0
CDX84885	Canola	nucleus	34.88	33.0
KRH59766	Soybean	nucleus	39.86	32.75
KRH41084	Soybean	nucleus	39.15	32.45
VIT_01s0244g00010.t01	Wine grape	nucleus	29.18	30.37
EER90712	Sorghum	nucleus	26.33	29.25
OQU91059	Sorghum	nucleus	29.18	26.03
EES05656	Sorghum	nucleus	32.38	25.35
OQU89735	Sorghum	nucleus	30.61	24.43
GSMUA_Achr2P21460_001	Banana	nucleus	32.38	23.51
EES15330	Sorghum	nucleus	30.61	21.66
OQU83382	Sorghum	nucleus	32.03	20.93
OQU81018	Sorghum	nucleus	25.98	19.47
KXG35834	Sorghum	nucleus	28.83	18.54
EES04098	Sorghum	nucleus	31.32	18.18
OQU76702	Sorghum	nucleus	25.62	17.56

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:8058982	UniProt:C5X5B1	EnsemblPlants:EER99171
ProteinID:EER99171	ProteinID:EER99171.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF88	SMART:SM00353	EnsemblPlantsGene:SORBI_3002G260600	SUPFAM:SSF47459	UniParc:UPI0001A83C16	RefSeq:XP_002462650.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:64567731..64569962

Molecular Weight (calculated)

30761.8 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.671

Length

281 amino acids

Sequence
(BLAST)

001: MASFPHFTQM EHGLAGASAH GTPSFLFCHG AATADSASLE TSSGVLDTSP QGTASDDKKP RKPREDSASF SSAHSKDSNS KESTKKKGGK RDRSSKEVDE
101: EEPKGYIHVR ARRGQATDSH SLAERVRRER ISERMRVLQA LVPGCDKVTG KALILDEIIN YVQSLQNQVE FLSMRIASLS PVLYGFGMDT DAFSDHTQKI
201: EGMLHHEALG MPSSVLNRPP SETHMDTHNS TSSPSYEVHG DGGTSISFPQ DNGSYMVQTV GEPRQELFNQ VVFSNHMCSF Q

Best Arabidopsis Sequence Match ( AT5G50915.1 )
(BLAST)

001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQEEGEEREN FVDRSGFNNN NFCSFP

Arabidopsis Description

BHLH137Transcription factor bHLH137 [Source:UniProtKB/Swiss-Prot;Acc:Q93W88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.