CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031561_P002	Maize	nucleus	83.38	84.65
TraesCS7B01G152800.1	Wheat	nucleus	77.08	79.48
TraesCS7D01G257000.2	Wheat	nucleus	77.08	79.07
Os08t0524800-01	Rice	nucleus	77.58	76.05
TraesCS7A01G256200.3	Wheat	nucleus	71.03	71.03
HORVU7Hr1G052870.23	Barley	nucleus	70.03	70.74
OQU89735	Sorghum	nucleus	54.16	61.08
EER90712	Sorghum	nucleus	22.92	35.97
OQU91059	Sorghum	nucleus	26.2	33.02
EES14175	Sorghum	nucleus	22.67	30.72
EER99171	Sorghum	nucleus	21.66	30.61
KXG35834	Sorghum	nucleus	31.23	28.38
Solyc09g057710.2.1	Tomato	nucleus	33.5	28.06
OQU81018	Sorghum	nucleus	26.45	28.0
EES05656	Sorghum	nucleus	25.19	27.86
EES04098	Sorghum	nucleus	33.25	27.27
PGSC0003DMT400053639	Potato	nucleus	33.0	26.63
OQU83382	Sorghum	nucleus	28.46	26.28
GSMUA_Achr10P...	Banana	nucleus	24.94	23.4
GSMUA_Achr7P22770_001	Banana	nucleus	25.19	22.62
GSMUA_Achr4P16120_001	Banana	nucleus	24.69	21.44
OQU76702	Sorghum	nucleus	21.66	20.98
GSMUA_Achr7P02770_001	Banana	nucleus	25.44	20.7

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:8063975	UniProt:C5YI62	EnsemblPlants:EES15330
ProteinID:EES15330	ProteinID:EES15330.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF169	SMART:SM00353	EnsemblPlantsGene:SORBI_3007G197700	SUPFAM:SSF47459	unigene:Sbi.13364	UniParc:UPI0001A8784F
RefSeq:XP_002445835.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:62920481..62923268

Molecular Weight (calculated)

42165.2 Da

IEP (calculated)

5.951

GRAVY (calculated)

-0.583

Length

397 amino acids

Sequence
(BLAST)

001: MEGSRAGAGD YIASLLSSSP RLDFGVLGAA DGGGEEEDCL DKFCGDPGFA ARAARLSSFS AQRFPGAASL FGLPPPVPAA SGGGEFAGSR EASSVSDPAS
101: AMMKDANAKK RKAPPAAKGK GKESSVQAGE QKDPDTKRCK TEGGEGKEGS PVKPKPEQAG SDSSVEDGGQ TQKPPGKGKN AKLVEPPKDY VHVRARRGQA
201: TDSHSLAERV RRERISQRMK VLQDLVPGCN KVIGKALMLD EIINYVQSLQ RQVEFLSMKL ATVNPLDFSN LPTLLQKDMF QACGPSASSV FSLESSSSGF
301: PFSDHGDVFQ SFVPNGLENQ CGLNPLDLAL SHATTGQYGF QDGTAGTTNL QQRSYWEEDL QSVFHIDNNG QSQENGVSVS AQSFHGQLQE GHMKMEF

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.