CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021019_P001	Maize	nucleus	90.34	89.83
Zm00001d006065_P002	Maize	nucleus	85.23	85.71
Os09t0501600-01	Rice	nucleus	70.17	67.49
TraesCS5B01G278600.1	Wheat	nucleus	65.06	61.39
TraesCS5D01G286300.5	Wheat	nucleus	64.49	60.53
TraesCS5A01G279200.2	Wheat	nucleus	65.34	59.59
EES15330	Sorghum	nucleus	61.08	54.16
HORVU5Hr1G075430.5	Barley	nucleus, plastid	63.92	52.82
EER90712	Sorghum	nucleus	25.85	35.97
OQU91059	Sorghum	nucleus	27.56	30.79
EER99171	Sorghum	nucleus	24.43	30.61
EES14175	Sorghum	nucleus	25.28	30.38
KXG35834	Sorghum	nucleus	32.39	26.09
Solyc09g057710.2.1	Tomato	nucleus	34.94	25.95
EES04098	Sorghum	nucleus	35.23	25.62
EES05656	Sorghum	nucleus	25.57	25.07
OQU81018	Sorghum	nucleus	26.42	24.8
PGSC0003DMT400053639	Potato	nucleus	34.66	24.8
OQU83382	Sorghum	nucleus	28.41	23.26
GSMUA_Achr10P...	Banana	nucleus	26.42	21.99
GSMUA_Achr7P22770_001	Banana	nucleus	26.7	21.27
GSMUA_Achr4P16120_001	Banana	nucleus	25.28	19.47
GSMUA_Achr7P02770_001	Banana	nucleus	26.99	19.47
OQU76702	Sorghum	nucleus	22.44	19.27

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	UniProt:A0A1W0W5Y5	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:OQU89735
ProteinID:OQU89735	ProteinID:OQU89735.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF169
SMART:SM00353	EnsemblPlantsGene:SORBI_3002G255200	SUPFAM:SSF47459	UniParc:UPI0001FBD996	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:64153487..64155911

Molecular Weight (calculated)

37122.7 Da

IEP (calculated)

6.056

GRAVY (calculated)

-0.410

Length

352 amino acids

Sequence
(BLAST)

001: MDSDYVASLL MGSSAHALDF AALDTGFLDT LCGGAGLFGV PGVAAGTGCG SGGGGGSPEG SSVSDPAWAR ASDGGNARKR KAPPTGSAGG KETCLGKAAE
101: AKVPDGKRCR VGASDSPVKP KVEEAAASDA SVEVKGQKKG KGKSPKPAVE PPKDYVHVRA RRGQATDSHS LAERVRREKI SQRMKFLQDL VPGCNKVVGK
201: ALMLDEIINY VQSLQQQVEF LSMKLATVNP QLNFSNLSTL LHKDMYQPCG PSANSVFPLE SAGAAFPFCD QGDLFQNFGS GAMEDQCSLS LLDTALPHTA
301: NPQFAFQKQQ RDFWEDGLQN ALPTGSEQRQ EDGLLVPNFD GQLQADQAKI EF

Best Arabidopsis Sequence Match ( AT3G23690.1 )
(BLAST)

001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P

Arabidopsis Description

BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.