Factsheet for TraesCS5A01G279200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G278600.1	Wheat	nucleus	94.82	98.12
TraesCS5D01G286300.5	Wheat	nucleus	94.56	97.33
HORVU5Hr1G075430.5	Barley	nucleus, plastid	90.93	82.39
Os09t0501600-01	Rice	nucleus	63.73	67.21
OQU89735	Sorghum	nucleus	59.59	65.34
Zm00001d021019_P001	Maize	nucleus	58.81	64.12
Zm00001d006065_P002	Maize	nucleus	54.66	60.29
TraesCS7A01G256200.3	Wheat	nucleus	49.74	48.36
TraesCS4A01G255800.3	Wheat	nucleus	25.13	29.85
TraesCS7A01G263700.1	Wheat	nucleus	22.8	28.39
TraesCS5A01G292900.1	Wheat	nucleus	20.47	28.11
TraesCS5A01G250600.1	Wheat	nucleus	30.31	27.53
TraesCS7A01G403900.1	Wheat	cytosol	10.88	27.27
TraesCS6A01G273000.2	Wheat	nucleus	25.39	27.15
Solyc09g057710.2.1	Tomato	nucleus	32.38	26.37
TraesCS3A01G421400.1	Wheat	nucleus	28.24	24.94
PGSC0003DMT400053639	Potato	nucleus	31.61	24.8
TraesCS2A01G275600.1	Wheat	nucleus	25.13	23.89
GSMUA_Achr10P...	Banana	nucleus	24.61	22.46
TraesCS7A01G211900.1	Wheat	nucleus	25.39	22.27
GSMUA_Achr7P22770_001	Banana	nucleus	24.87	21.72
GSMUA_Achr4P16120_001	Banana	nucleus	23.58	19.91
GSMUA_Achr7P02770_001	Banana	nucleus	24.35	19.26

Protein Annotations

EnsemblPlants:TraesCS5A01G279200.2	EnsemblPlantsGene:TraesCS5A01G279200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF169	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr5A:-:488262594..488264413

Molecular Weight (calculated)

40636.7 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.491

Length

386 amino acids

Sequence
(BLAST)

001: MDGDYVSGLL MGSAGLDFGV PGLDAGFFET LCGGAGAAGL AAMFGDRAAG MPGFGGNGGQ FGAAEGGGGG ELGAASREGS SVSDPAWAYG ANARKRKAPA
101: AGAGKGKETA SCFAKPKMTP EFGLQMGEPT GPDSKKCKIE DETVRPKVEE EAATATASDG SAGGERGRKQ AKGKGSKSKQ PAADEPPRDY VHVRARRGQA
201: TDSHSLAERV RREKITLKMK MLQDLVPGCN KVIGKALMLD EIINYVQSLQ QQVEFLSMKL STVNPQLDFD TLSNLLHKDM NQALGPSAST VFPLESAGTV
301: YPLCDQADLY QSFSSGAMEN QCSMGLLDMA LPPAPQYPFQ KQQQDFWEAS AQNGLHMDHE QSQENAGSAP NFDGQLQAAD HPEIEF

Best Arabidopsis Sequence Match ( AT1G26260.3 )
(BLAST)

001: MSDKDEFAAK KKDLVNTPVD LYPPENPMLG PSPMMDSFRE TLWHDGGFNV HTDADTSFRD STGLFLQDTQ IPSGSKLDNG PLTDASKLVK ERSINNVSED
101: SQSSGGNGHD DAKCGQTSSK GFSSKKRKRI GKDCEEEEDK KQKDEQSPTS NANKTNSEKQ PSDSLKDGYI HMRARRGQAT NSHSLAERVR REKISERMKF
201: LQDLVPGCDK VTGKAVMLDE IINYVQSLQC QIEFLSMKLS AVNPVLDFNL ESLLAKDALQ SSAPTFPHNM SMLYPPVSYL SQTGFMQPNI SSMSLLSGGL
301: KRQETHGYES DHHNLVHMNH ETGTAPDHED TTADMKVEP

Arabidopsis Description

BHLH76Transcription factor bHLH76 [Source:UniProtKB/Swiss-Prot;Acc:Q9C670]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.