Factsheet for Zm00001d006065_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021019_P001	Maize	nucleus	86.57	85.59
OQU89735	Sorghum	nucleus	85.71	85.23
Os09t0501600-01	Rice	nucleus	65.43	62.57
TraesCS5B01G278600.1	Wheat	nucleus	60.0	56.3
TraesCS5D01G286300.5	Wheat	nucleus	60.0	56.0
TraesCS5A01G279200.2	Wheat	nucleus	60.29	54.66
Zm00001d031561_P002	Maize	nucleus	57.71	51.66
HORVU5Hr1G075430.5	Barley	nucleus, plastid	59.43	48.83
Zm00001d034503_P002	Maize	nucleus	25.14	34.51
Zm00001d007768_P001	Maize	nucleus	24.57	34.26
Zm00001d033870_P001	Maize	nucleus	26.29	28.48
Zm00001d031665_P001	Maize	mitochondrion	25.14	27.94
Zm00001d021086_P001	Maize	nucleus, plastid	22.86	27.87
Zm00001d006110_P002	Maize	nucleus, plastid	24.29	26.48
Zm00001d049870_P001	Maize	nucleus	24.0	26.33
Zm00001d051569_P001	Maize	nucleus	25.71	26.32
Zm00001d020826_P001	Maize	nucleus	32.57	26.27
Zm00001d042373_P002	Maize	nucleus	34.0	25.7
Solyc09g057710.2.1	Tomato	nucleus	34.0	25.11
Zm00001d012067_P003	Maize	nucleus	34.0	24.79
Zm00001d005964_P002	Maize	nucleus	31.71	24.5
PGSC0003DMT400053639	Potato	nucleus	34.0	24.19
Zm00001d013357_P001	Maize	nucleus	23.43	23.56
Zm00001d017778_P001	Maize	nucleus	25.71	23.44
Zm00001d049158_P001	Maize	nucleus	28.29	22.3
GSMUA_Achr10P...	Banana	nucleus	26.86	22.22
Zm00001d046759_P001	Maize	plastid	22.29	21.91
GSMUA_Achr7P22770_001	Banana	nucleus	27.14	21.49
Zm00001d036807_P001	Maize	nucleus	22.57	21.35
Zm00001d007311_P001	Maize	nucleus	27.71	21.04
GSMUA_Achr4P16120_001	Banana	nucleus	26.0	19.91
GSMUA_Achr7P02770_001	Banana	nucleus	27.14	19.47

Protein Annotations

EntrezGene:100216628	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EMBL:BT066126	UniProt:C0PCV7
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	ProteinID:ONM22709.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF169
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000194B41E	EnsemblPlantsGene:Zm00001d006065	EnsemblPlants:Zm00001d006065_P002	EnsemblPlants:Zm00001d006065_T002
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

bHLH-transcription factor 121Transcription factor bHLH62

Coordinates

chr2:-:197131308..197133640

Molecular Weight (calculated)

36911.4 Da

IEP (calculated)

5.473

GRAVY (calculated)

-0.415

Length

350 amino acids

Sequence
(BLAST)

001: MDSDYIASLL MGSSAPALSF AALDAGFLDT LRGGGGGGLF GVPAEAGCGG GSPEGSSVSD PAWARARDYG NARKRKAPPT GSAGGKEACL SKVAEAKGPD
101: GKRCRVVGAS DSPVKPKEEE EEAAASDALV EVKAQKKGKG KSSKPAVEPP KDYVHVRARR GQATDSHSLA ERVRREKISQ RMKFLQDLVP GCNKVVGKAL
201: MLDEIINYVQ SLQQQVEFLS MKLATVNPEL DFSNLSTLLH KDMYQQPCGG PSASSVFPLE SAGAAFPFCE QADLFHSFGS GGSGSGSGME DQCSLSLLLD
301: TALPHAASPQ FAFQKQQRDL WEDGLQHALP TPTTGSEQRQ EEDGLLVPDL

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.