Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU83382 | Sorghum | nucleus | 65.29 | 70.0 |
| Zm00001d049158_P001 | Maize | nucleus | 60.95 | 63.29 |
| Os11t0442500-00 | Rice | nucleus | 46.2 | 56.8 |
| Zm00001d007768_P001 | Maize | nucleus | 18.66 | 34.26 |
| Zm00001d034503_P002 | Maize | nucleus | 18.87 | 34.12 |
| Zm00001d042373_P002 | Maize | nucleus | 32.97 | 32.83 |
| Zm00001d012067_P003 | Maize | nucleus | 32.1 | 30.83 |
| Zm00001d033870_P001 | Maize | nucleus | 21.26 | 30.34 |
| Zm00001d049870_P001 | Maize | nucleus | 19.74 | 28.53 |
| PGSC0003DMT400053639 | Potato | nucleus | 30.37 | 28.46 |
| Zm00001d021086_P001 | Maize | nucleus, plastid | 17.57 | 28.22 |
| Zm00001d006065_P002 | Maize | nucleus | 21.04 | 27.71 |
| Zm00001d021019_P001 | Maize | nucleus | 21.26 | 27.68 |
| Solyc09g057710.2.1 | Tomato | nucleus | 28.42 | 27.64 |
| Zm00001d051569_P001 | Maize | nucleus | 20.17 | 27.19 |
| Zm00001d031665_P001 | Maize | mitochondrion | 18.44 | 26.98 |
| Zm00001d031561_P002 | Maize | nucleus | 22.56 | 26.6 |
| Zm00001d006110_P002 | Maize | nucleus, plastid | 18.44 | 26.48 |
| Zm00001d046759_P001 | Maize | plastid | 20.39 | 26.4 |
| Zm00001d017778_P001 | Maize | nucleus | 21.26 | 25.52 |
| Zm00001d020826_P001 | Maize | nucleus | 22.99 | 24.42 |
| Zm00001d036807_P001 | Maize | nucleus | 19.52 | 24.32 |
| Zm00001d005964_P002 | Maize | nucleus | 22.99 | 23.4 |
| GSMUA_Achr7P22770_001 | Banana | nucleus | 22.13 | 23.08 |
| GSMUA_Achr10P... | Banana | nucleus | 20.82 | 22.7 |
| Zm00001d013357_P001 | Maize | nucleus | 16.7 | 22.13 |
| GSMUA_Achr4P16120_001 | Banana | nucleus | 21.69 | 21.88 |
| GSMUA_Achr7P02770_001 | Banana | nucleus | 22.34 | 21.11 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | UniProt:A0A1D6F5G0 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | ProteinID:ONM26527.1 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF182 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000844968B | EnsemblPlantsGene:Zm00001d007311 | EnsemblPlants:Zm00001d007311_P001 | EnsemblPlants:Zm00001d007311_T001 | InterPro:bHLH_dom | SEG:seg |
Description
bHLH-transcription factor 41BHLH transcription factor
Coordinates
chr2:-:227455863..227458214
Molecular Weight (calculated)
48254.1 Da
IEP (calculated)
7.973
GRAVY (calculated)
-0.340
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRTHHPCF ASVESWEQAA MAHDGFLGDL ACPLPLAHAA TAAPFDPLRV HVAHALTGAG AGWEHDAATG ALVPSRPRPL SPSSLAAATA VVVGGGGDAV
101: EAALMEQLAS RLGVSVPSPP PSRYASCHGT PAGSPSKSAA PWVLAGDAAP AERATGLPCF PASCGELSRV PSCQSSLLGE HAPTPAPAPL PGAAKQHASD
201: GSCSDGPCRK RKASGGKAKD VVTTATPKPL MNGCRNSETV KSREPETMAK RRKLSTDAAR DEAGSHGNGK GKEVAPAAEP EPQPPKDYIH VRARRGQATD
301: SHSLAERVRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI INYVQSLQCQ VEFLSMKLST VDPRRELDVG CFVVPKDDVT MQANRLCAPA TSSSSSAFCY
401: AARSVVTNAK GFETPLPLAN HGVAADDRPL ERRTRDAGPQ AGSLWEEDDL QSLVLMGFRG R
101: EAALMEQLAS RLGVSVPSPP PSRYASCHGT PAGSPSKSAA PWVLAGDAAP AERATGLPCF PASCGELSRV PSCQSSLLGE HAPTPAPAPL PGAAKQHASD
201: GSCSDGPCRK RKASGGKAKD VVTTATPKPL MNGCRNSETV KSREPETMAK RRKLSTDAAR DEAGSHGNGK GKEVAPAAEP EPQPPKDYIH VRARRGQATD
301: SHSLAERVRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI INYVQSLQCQ VEFLSMKLST VDPRRELDVG CFVVPKDDVT MQANRLCAPA TSSSSSAFCY
401: AARSVVTNAK GFETPLPLAN HGVAADDRPL ERRTRDAGPQ AGSLWEEDDL QSLVLMGFRG R
001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
Arabidopsis Description
BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.