CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049158_P001	Maize	nucleus	71.16	68.92
Zm00001d007311_P001	Maize	nucleus	70.0	65.29
Os11t0442500-00	Rice	nucleus	46.98	53.87
EER90712	Sorghum	nucleus	20.47	34.78
EES14175	Sorghum	nucleus	22.56	33.11
EER99171	Sorghum	nucleus	20.93	32.03
OQU91059	Sorghum	nucleus	23.02	31.43
EES04098	Sorghum	nucleus	33.95	30.17
Solyc09g057710.2.1	Tomato	nucleus	32.56	29.54
PGSC0003DMT400053639	Potato	nucleus	33.02	28.86
EES15330	Sorghum	nucleus	26.28	28.46
OQU89735	Sorghum	nucleus	23.26	28.41
OQU81018	Sorghum	nucleus	23.95	27.47
EES05656	Sorghum	nucleus	22.56	27.02
KXG35834	Sorghum	nucleus	26.51	26.09
OQU76702	Sorghum	nucleus	23.72	24.88
GSMUA_Achr7P22770_001	Banana	nucleus	24.19	23.53
GSMUA_Achr10P...	Banana	nucleus	23.02	23.4
GSMUA_Achr7P02770_001	Banana	nucleus	24.65	21.72
GSMUA_Achr4P16120_001	Banana	nucleus	23.02	21.66

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	UniProt:A0A109NDS5	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	ProteinID:KXG19076.1
EnsemblPlants:OQU83382	ProteinID:OQU83382	ProteinID:OQU83382.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	EnsemblPlantsGene:SORBI_3005G110490	SUPFAM:SSF47459	UniParc:UPI00076BBFE7	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:30913641..30915532

Molecular Weight (calculated)

45701.1 Da

IEP (calculated)

8.749

GRAVY (calculated)

-0.407

Length

430 amino acids

Sequence
(BLAST)

001: MAHDGFFGGF HDLSWPLDHA AAARAAPFDP LREVVHVPHA LMGAGARWEH DAAVGALVPS QSPSPSPSSL ATAAAVGGGD VVEAALMEQL AGRLGVSVPS
101: PRSSRRRRCA RSPGDAVLTE RAARLSCFLA SVGKLSRVGS SQSLLREQAP APEPAPLPGA VKQHASDGSC SDGPCRKRKA SGGKSKAKVV VTPAAPKSRA
201: PETRAKKCKL STDVGHDDEE QKPAAGEAWH DNSNGKEVAA EPSKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCSKVTG KAVMLDEIIN
301: YVQSLQRQVE FLSMKLSTVN PRLKLDVDSC IPKDANKLFA QTTSTIAQPL PPVYALEGSS SAFCYTSSPG TAAQSVVTNA KGFGMHSSLM NHGDVDRSLE
401: GHQNTNPQMG SLWEEDDLQS LVLMGFRGNT

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.