Factsheet for PGSC0003DMT400053639

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g057710.2.1	Tomato	nucleus	88.41	91.77
PGSC0003DMT400042791	Potato	nucleus	40.04	44.87
PGSC0003DMT400004855	Potato	nucleus	19.72	43.89
Os04t0350700-01	Rice	nucleus	22.97	42.97
GSMUA_Achr3P02490_001	Banana	nucleus	35.37	41.23
GSMUA_Achr9P07330_001	Banana	nucleus	30.08	40.88
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	37.8	39.83
GSMUA_Achr2P21280_001	Banana	nucleus	40.04	39.16
PGSC0003DMT400058204	Potato	nucleus	21.34	38.89
GSMUA_Achr6P27780_001	Banana	nucleus	41.26	38.89
GSMUA_Achr2P06090_001	Banana	nucleus	37.2	38.28
TraesCS2A01G275600.1	Wheat	nucleus	30.69	37.19
Os01t0915600-01	Rice	nucleus	36.18	37.01
TraesCS2B01G293300.1	Wheat	nucleus	31.5	36.99
TraesCS2D01G274600.1	Wheat	nucleus	30.69	36.83
Zm00001d042373_P002	Maize	nucleus	34.35	36.5
PGSC0003DMT400062844	Potato	nucleus	21.54	36.43
Os11t0442500-00	Rice	nucleus	27.64	36.27
PGSC0003DMT400011651	Potato	nucleus	30.28	36.08
PGSC0003DMT400040021	Potato	nucleus	22.15	35.97
EES04098	Sorghum	nucleus	34.76	35.33
Zm00001d012067_P003	Maize	nucleus	33.94	34.79
TraesCS3A01G421400.1	Wheat	nucleus	30.89	34.78
PGSC0003DMT400058169	Potato	nucleus	18.9	34.7
OQU89735	Sorghum	nucleus	24.8	34.66
PGSC0003DMT400069568	Potato	nucleus	19.92	34.51
Os09t0501600-01	Rice	nucleus	25.61	34.43
Zm00001d006065_P002	Maize	nucleus	24.19	34.0
Zm00001d021019_P001	Maize	nucleus	24.39	33.9
TraesCS7B01G152800.1	Wheat	nucleus	26.42	33.77
TraesCS7D01G257000.2	Wheat	nucleus	26.42	33.59
TraesCS3B01G457400.1	Wheat	nucleus	32.32	33.54
TraesCS3D01G417300.2	Wheat	nucleus	32.52	33.4
PGSC0003DMT400051137	Potato	nucleus	22.76	33.14
OQU83382	Sorghum	nucleus	28.86	33.02
EES15330	Sorghum	nucleus	26.63	33.0
Os08t0524800-01	Rice	nucleus	27.03	32.84
TraesCS5B01G278600.1	Wheat	nucleus	24.8	32.71
Zm00001d031561_P002	Maize	nucleus	25.81	32.48
TraesCS5D01G286300.5	Wheat	nucleus	24.59	32.27
TraesCS5A01G279200.2	Wheat	nucleus	24.8	31.61
HORVU7Hr1G052870.23	Barley	nucleus	25.2	31.55
TraesCS7A01G256200.3	Wheat	nucleus	25.0	30.98
Zm00001d007311_P001	Maize	nucleus	28.46	30.37
GSMUA_Achr3P17290_001	Banana	plastid	34.96	30.18
Zm00001d049158_P001	Maize	nucleus	27.03	29.95
PGSC0003DMT400012591	Potato	nucleus	23.17	29.84
PGSC0003DMT400021130	Potato	nucleus	21.75	29.72
PGSC0003DMT400001888	Potato	nucleus	26.02	28.96
HORVU5Hr1G075430.5	Barley	nucleus, plastid	24.8	28.64
PGSC0003DMT400022704	Potato	nucleus	30.89	28.41
GSMUA_Achr10P...	Banana	nucleus	24.19	28.13
PGSC0003DMT400050585	Potato	nucleus	29.47	27.88
GSMUA_Achr7P22770_001	Banana	nucleus	24.8	27.6
PGSC0003DMT400004830	Potato	nucleus	25.81	27.43
GSMUA_Achr10P...	Banana	mitochondrion	33.94	25.38
HORVU3Hr1G093310.2	Barley	nucleus, plasma membrane, plastid	32.32	25.0
GSMUA_Achr7P02770_001	Banana	nucleus	22.36	22.54
GSMUA_Achr4P16120_001	Banana	nucleus	20.73	22.32

Protein Annotations

EntrezGene:102591091	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1BV88
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400020807	PGSC:PGSC0003DMG400020807	EnsemblPlants:PGSC0003DMT400053639	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000294DCD6	RefSeq:XP_006363454.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020807]

Coordinates

chr9:-:32234494..32236890

Molecular Weight (calculated)

53995.3 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.779

Length

492 amino acids

Sequence
(BLAST)

001: MEKEYFMNGG IPNPALQFEP TMAFPSWNPL HSGQSSDCLF NPNWDHSTAQ FNQFDSTLNS IVSSSPAELV GKRSPQPVFN NLHNNSNNSC YSTPVNSPPK
101: LHIPMMGKDN IPNLGSSLPP PLPADPSFAQ RAAKFSCFGS SSFNGRTSPL GLNNTELSHR SAQPLGNGKL PRVSSSPSLK QGGSPLQIKN SGQTRMEMMA
201: NNSNESASEP SGETGSKLPT ELNSSSRKRK TVSRGKTKED SPTQGANGNR GGEADDNARA KRCKQVESTG IEVNMEESKD DETQKQVMEN QKPPEPPKDY
301: IHVRARRGQA TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL ATVNPNLDYP LSKDICQPNG SLPHPVFPVD
401: KTSSSYQQGR SDIPNGALSR CSVDTLDNSL CRSLGLQLPP LDGFAEYLNQ FPAICEDDLQ SFVQMGFSQN PNKDMTLQSQ GPHQTSHMKI EM

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.