Factsheet for PGSC0003DMT400051980

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083170.2.1	Tomato	nucleus	92.72	93.32
PGSC0003DMT400004855	Potato	nucleus	18.42	38.91
PGSC0003DMT400042791	Potato	nucleus	35.76	38.04
PGSC0003DMT400053639	Potato	nucleus	39.83	37.8
PGSC0003DMT400058204	Potato	nucleus	21.2	36.67
PGSC0003DMT400011651	Potato	nucleus	30.84	34.87
PGSC0003DMT400058169	Potato	nucleus	19.7	34.33
PGSC0003DMT400040021	Potato	nucleus	22.06	33.99
PGSC0003DMT400069568	Potato	nucleus	20.56	33.8
PGSC0003DMT400062844	Potato	nucleus	19.7	31.62
PGSC0003DMT400021130	Potato	nucleus	23.55	30.56
PGSC0003DMT400051137	Potato	nucleus	21.84	30.18
PGSC0003DMT400012591	Potato	nucleus	22.91	28.01
PGSC0003DMT400001888	Potato	nucleus	24.2	25.57
PGSC0003DMT400050585	Potato	nucleus	27.41	24.62
PGSC0003DMT400004830	Potato	nucleus	24.2	24.41
PGSC0003DMT400022704	Potato	nucleus	27.84	24.3

Protein Annotations

EntrezGene:102590121	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1BSK9
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400020174	PGSC:PGSC0003DMG400020174	EnsemblPlants:PGSC0003DMT400051980	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002960BC7	RefSeq:XP_006352666.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020174]

Coordinates

chr6:+:58183591..58186445

Molecular Weight (calculated)

51766.9 Da

IEP (calculated)

7.558

GRAVY (calculated)

-0.691

Length

467 amino acids

Sequence
(BLAST)

001: MDNDYFSNGG IQPPFHFDPK IPLNSLHSPQ EQNSDYFLNT HWDNNSTDNQ YTHFDSVLSS IVSSPVPSNS VNSNSSLCEL IGKLGSICCS PSTPFTNNCD
101: STRTSCYTTP MNSPPKLHIP IMNQIGKDKL PNLGNSVLMN SPPFPSLSAA KFSGFGSRSF NGRTSQYELN NEESRYGSGT GVMGRGNLTR ISSSPSVVQN
201: KNSSLMMCER LNLGKISGPY EECSVSEQDP SGEIGSKTRY VLNSKKRKAV KSKNYVPIVD ETGKKRAKST EGNGSNNGTV KMEEQKGSED DGAEKEAKEN
301: RKIAEPQKDY IHVRARRGQA TDSHSLAERV RREKISQRMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ HQVEFLSMKL ASVNPRMDFH IDSLLHKEIS
401: QPSGSLHQHV FLVDGYGENL AQLPTICEDD LQSIVQMGFN QNSNQDLILQ SQTFPVPNSE SHMKIKM

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.