Factsheet for PGSC0003DMT400004830

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005220.1.1	Tomato	nucleus	70.63	78.04
PGSC0003DMT400050585	Potato	nucleus	62.2	55.38
PGSC0003DMT400022704	Potato	nucleus	60.48	52.34
VIT_01s0010g00740.t01	Wine grape	nucleus	47.73	47.12
Bra038336.1-P	Field mustard	plastid	33.05	41.92
KRH71031	Soybean	nucleus	48.6	40.83
KRH75189	Soybean	nucleus	48.16	40.55
GSMUA_Achr6P36210_001	Banana	nucleus	23.54	39.64
AT1G68920.1	Thale cress	nucleus	40.6	38.68
CDY45835	Canola	nucleus	37.58	38.41
CDY33568	Canola	nucleus	39.74	38.17
Bra004348.1-P	Field mustard	nucleus	39.09	38.03
CDX95974	Canola	nucleus	39.09	37.79
CDX81575	Canola	nucleus	38.66	37.68
Zm00001d020826_P001	Maize	nucleus	33.91	36.18
TraesCS5B01G248600.1	Wheat	nucleus	32.83	35.85
TraesCS5A01G250600.1	Wheat	nucleus	32.83	35.76
Zm00001d005964_P002	Maize	nucleus	34.99	35.76
Os06t0275600-01	Rice	cytosol, nucleus	33.69	35.7
TraesCS5D01G258300.1	Wheat	nucleus	32.61	35.61
Os09t0474100-01	Rice	nucleus	32.61	35.28
KXG35834	Sorghum	nucleus	33.26	35.24
PGSC0003DMT400004855	Potato	nucleus	16.63	34.84
GSMUA_Achr8P24490_001	Banana	nucleus	30.24	33.82
PGSC0003DMT400058169	Potato	nucleus	19.44	33.58
PGSC0003DMT400040021	Potato	nucleus	21.81	33.33
GSMUA_Achr9P28060_001	Banana	nucleus	21.6	32.68
GSMUA_Achr9P18510_001	Banana	nucleus	21.6	32.05
PGSC0003DMT400069568	Potato	nucleus	19.01	30.99
PGSC0003DMT400058204	Potato	nucleus	17.71	30.37
PGSC0003DMT400062844	Potato	nucleus	18.57	29.55
GSMUA_Achr3P10600_001	Banana	nucleus	28.51	28.63
PGSC0003DMT400042791	Potato	nucleus	27.0	28.47
PGSC0003DMT400051137	Potato	nucleus	20.52	28.11
OQU81018	Sorghum	nucleus	22.46	27.73
PGSC0003DMT400012591	Potato	nucleus	22.46	27.23
PGSC0003DMT400011651	Potato	nucleus	23.97	26.88
PGSC0003DMT400053639	Potato	nucleus	27.43	25.81
PGSC0003DMT400021130	Potato	nucleus	19.87	25.56
TraesCS7A01G211900.1	Wheat	nucleus	24.19	25.45
TraesCS7B01G118800.1	Wheat	nucleus	23.97	25.23
TraesCS7D01G213500.1	Wheat	nucleus	23.97	25.23
HORVU0Hr1G020200.1	Barley	nucleus	23.76	25.0
PGSC0003DMT400001888	Potato	nucleus	23.11	24.21
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	24.41	24.2
Os08t0487700-00	Rice	nucleus	16.85	22.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400004830	EnsemblPlantsGene:PGSC0003DMG400001918	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400001918	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002952C17	UniProt:M0ZP13	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Transcription factor bHLH49 [Source:PGSC_GENE;Acc:PGSC0003DMG400001918]

Coordinates

chr00:+:12536463..12539519

Molecular Weight (calculated)

50684.3 Da

IEP (calculated)

4.681

GRAVY (calculated)

-0.519

Length

463 amino acids

Sequence
(BLAST)

001: MDIVSKDDVD PENMFSDWQL SDSNLTNASN RIIDSFCASV WGNPISSSNL GFCGTNIQMN PGAAIGLDPL GASVNRMVAM GWTQPNVMSK GGAFISPTTG
101: MVPQSLTQLS ADSGFIERAT RFSCFSGGIV GDMMNPFAIP NSSDTYHNGL TFGESQEVFA SNGLQSPSTA ISQKQQMRNA VESSDQDVSL PLEYEHTDRS
201: PFKNEKNVNF AKSQDEAKEC VGISENESEC SGHQEEVEGG DSSARCLGSR KRKRSDQDTE FDQMNGGQQQ PAEMTKEQNL NSIACRPGGK NEDPPKEDYI
301: HIRARRGQAT NSHSLAERLR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TINPRLDFNI DALLAKDILL LRADPSSSLA
401: FAPDLTLPYQ SSHQLQPGLL QSGLPGSGIS TDAFLKSIYP YLAVMSGGYK ESSSQLPNIW DDR

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.