Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G258300.1 | Wheat | nucleus | 98.82 | 98.82 |
TraesCS5A01G250600.1 | Wheat | nucleus | 98.82 | 98.59 |
Zm00001d020826_P001 | Maize | nucleus | 79.72 | 77.88 |
Os09t0474100-01 | Rice | nucleus | 78.54 | 77.8 |
KXG35834 | Sorghum | nucleus | 79.95 | 77.57 |
Zm00001d005964_P002 | Maize | nucleus | 71.93 | 67.33 |
GSMUA_Achr6P36210_001 | Banana | nucleus | 29.95 | 46.18 |
Bra038336.1-P | Field mustard | plastid | 33.25 | 38.63 |
VIT_01s0010g00740.t01 | Wine grape | nucleus | 42.45 | 38.38 |
GSMUA_Achr8P24490_001 | Banana | nucleus | 37.03 | 37.92 |
GSMUA_Achr9P28060_001 | Banana | nucleus | 24.76 | 34.31 |
Solyc05g010610.2.1 | Tomato | nucleus | 41.75 | 34.24 |
CDY33568 | Canola | nucleus | 38.68 | 34.02 |
PGSC0003DMT400050585 | Potato | nucleus | 41.51 | 33.85 |
Bra004348.1-P | Field mustard | nucleus | 37.97 | 33.82 |
CDX95974 | Canola | nucleus | 38.21 | 33.82 |
CDY45835 | Canola | nucleus | 36.08 | 33.77 |
GSMUA_Achr9P18510_001 | Banana | nucleus | 24.76 | 33.65 |
PGSC0003DMT400004830 | Potato | nucleus | 35.85 | 32.83 |
KRH75189 | Soybean | nucleus | 42.45 | 32.73 |
CDX81575 | Canola | nucleus | 36.32 | 32.42 |
KRH71031 | Soybean | nucleus | 41.75 | 32.12 |
TraesCS7B01G152800.1 | Wheat | nucleus | 29.01 | 31.95 |
PGSC0003DMT400022704 | Potato | nucleus | 40.09 | 31.78 |
AT1G68920.1 | Thale cress | nucleus | 36.32 | 31.69 |
TraesCS4B01G059000.1 | Wheat | nucleus | 24.06 | 31.58 |
Solyc01g010130.2.1 | Tomato | nucleus | 39.86 | 31.47 |
TraesCS5B01G457600.1 | Wheat | nucleus, plastid | 18.63 | 31.1 |
TraesCS5B01G278600.1 | Wheat | nucleus | 27.12 | 30.83 |
TraesCS5B01G292100.1 | Wheat | nucleus | 19.1 | 29.35 |
GSMUA_Achr3P10600_001 | Banana | nucleus | 31.6 | 29.07 |
TraesCS7B01G303300.1 | Wheat | nucleus | 21.23 | 28.66 |
Solyc04g005220.1.1 | Tomato | nucleus | 27.59 | 27.92 |
TraesCS6B01G300400.1 | Wheat | nucleus | 22.64 | 27.35 |
TraesCS7B01G118800.1 | Wheat | nucleus | 27.59 | 26.59 |
TraesCS3B01G457400.1 | Wheat | nucleus | 29.72 | 26.58 |
TraesCS7B01G161700.3 | Wheat | nucleus, plastid | 20.05 | 25.37 |
TraesCS2B01G293300.1 | Wheat | nucleus | 22.64 | 22.91 |
Protein Annotations
EnsemblPlants:TraesCS5B01G248600.1 | EnsemblPlantsGene:TraesCS5B01G248600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
PANTHER:PTHR12565:SF182 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
TIGR:cd00083 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:430740454..430742798
Molecular Weight (calculated)
44435.0 Da
IEP (calculated)
6.800
GRAVY (calculated)
-0.581
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMNESSEKG MEGNGSSGPG GGIPVEWQSQ FSGGGFSAHQ HQQHPHMMDS FGSGMWSAAS QHGAGFLAPV PGFLPPPGLG GHFPVDSGFI ERAARSSCFV
101: GPGAGGGMMG AGAFGGAGDQ QMGSAFGEGY LDHRRKEGGD KAEPELAGSG GVPSSEAAGG DCSSKGSDSK KRRRPSEVMG GDQVQSSNVA ADSANESAQS
201: KDKGEESSPA TGTTTGGKSK GKGAKESSEK EDYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS
301: MKLATVNPRL DLNIEGLLSK DLLRFPGVSS SSMGFSPEMM HPQLQLSQPG LMQGGAAAMA NSDVFRRIMQ AQLGAKDGSH SQMAHALNGP FSDHVAQMAY
401: PSMGSSHSHS QDLSIRPSQD AYQM
101: GPGAGGGMMG AGAFGGAGDQ QMGSAFGEGY LDHRRKEGGD KAEPELAGSG GVPSSEAAGG DCSSKGSDSK KRRRPSEVMG GDQVQSSNVA ADSANESAQS
201: KDKGEESSPA TGTTTGGKSK GKGAKESSEK EDYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS
301: MKLATVNPRL DLNIEGLLSK DLLRFPGVSS SSMGFSPEMM HPQLQLSQPG LMQGGAAAMA NSDVFRRIMQ AQLGAKDGSH SQMAHALNGP FSDHVAQMAY
401: PSMGSSHSHS QDLSIRPSQD AYQM
001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP
Arabidopsis Description
BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.