Factsheet for TraesCS2B01G293300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G274600.1	Wheat	nucleus	93.56	95.61
TraesCS2A01G275600.1	Wheat	nucleus	91.41	94.33
Os04t0350700-01	Rice	nucleus	34.84	55.51
Solyc09g057710.2.1	Tomato	nucleus	36.75	32.49
TraesCS5B01G457600.1	Wheat	nucleus, plastid	19.33	31.89
PGSC0003DMT400053639	Potato	nucleus	36.99	31.5
TraesCS3B01G457400.1	Wheat	nucleus	35.56	31.43
TraesCS4B01G059000.1	Wheat	nucleus	23.87	30.96
TraesCS5B01G292100.1	Wheat	nucleus	19.09	28.99
TraesCS7B01G161700.3	Wheat	nucleus, plastid	22.2	27.76
TraesCS5B01G278600.1	Wheat	nucleus	23.39	26.27
TraesCS7B01G303300.1	Wheat	nucleus	19.57	26.11
TraesCS6B01G300400.1	Wheat	nucleus	21.48	25.64
TraesCS7B01G152800.1	Wheat	nucleus	23.39	25.45
GSMUA_Achr10P...	Banana	nucleus	23.63	23.4
GSMUA_Achr7P22770_001	Banana	nucleus	24.11	22.85
TraesCS5B01G248600.1	Wheat	nucleus	22.91	22.64
TraesCS7B01G118800.1	Wheat	nucleus	23.15	22.05
GSMUA_Achr7P02770_001	Banana	nucleus	23.63	20.29
GSMUA_Achr4P16120_001	Banana	nucleus	21.72	19.91

Protein Annotations

EnsemblPlants:TraesCS2B01G293300.1	EnsemblPlantsGene:TraesCS2B01G293300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF182	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr2B:+:408724051..408726650

Molecular Weight (calculated)

43684.2 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.347

Length

419 amino acids

Sequence
(BLAST)

001: MANEHFFPGE YFSSGLAAPF LGASYVQPPC SGFEAAAAMA FGLPWADQHL PVDSSATTAH FDSALSSLVS SPASATAGGG LGFAHGGEDD VAIGDLIGRL
101: GSICNGASAN NSCYSTPISS PPRGAPQAFR GYGAIAALET GRLSRVSSSK SLVGNTSGVA ATAPLDQSAQ LEMSPETDSQ PATAVQDPPT KKGAAGSARK
201: RKAAPAKGKA KASLPAVQPS CSMAAINTSP PKRPRVADGS NDENPGAVEE EKAEPAKDYI HVRARRGQAT DSHSLAERVR REKIGERMKL LQSLVPSCNK
301: ITGKALMLDE IINYVQSLQR QVEFLSMKLS TMNPQLELDE QQIPSKEMAV PGFSYAGSPV AVAAGHSHGA ELEGTFSWEQ DLQSMVQMGG ASSSHRQDPQ
401: AFYGSGQPAT TVNHMKVEP

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.