Factsheet for TraesCS5D01G258300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G248600.1	Wheat	nucleus	98.82	98.82
TraesCS5A01G250600.1	Wheat	nucleus	98.58	98.35
Os09t0474100-01	Rice	nucleus	78.54	77.8
KXG35834	Sorghum	nucleus	79.95	77.57
Zm00001d020826_P001	Maize	nucleus	79.25	77.42
Zm00001d005964_P002	Maize	nucleus	71.46	66.89
GSMUA_Achr6P36210_001	Banana	nucleus	30.19	46.55
Bra038336.1-P	Field mustard	plastid	33.25	38.63
VIT_01s0010g00740.t01	Wine grape	nucleus	42.22	38.17
GSMUA_Achr8P24490_001	Banana	nucleus	36.79	37.68
GSMUA_Achr9P28060_001	Banana	nucleus	24.76	34.31
Solyc05g010610.2.1	Tomato	nucleus	41.51	34.04
CDY33568	Canola	nucleus	38.68	34.02
Bra004348.1-P	Field mustard	nucleus	37.97	33.82
CDX95974	Canola	nucleus	38.21	33.82
CDY45835	Canola	nucleus	36.08	33.77
PGSC0003DMT400050585	Potato	nucleus	41.27	33.65
GSMUA_Achr9P18510_001	Banana	nucleus	24.76	33.65
TraesCS4D01G058900.1	Wheat	nucleus	24.53	32.91
KRH75189	Soybean	nucleus	42.69	32.91
PGSC0003DMT400004830	Potato	nucleus	35.61	32.61
CDX81575	Canola	nucleus	36.32	32.42
KRH71031	Soybean	nucleus	41.98	32.3
TraesCS7D01G257000.2	Wheat	nucleus	29.01	31.78
PGSC0003DMT400022704	Potato	nucleus	40.09	31.78
AT1G68920.1	Thale cress	nucleus	36.32	31.69
Solyc01g010130.2.1	Tomato	nucleus	39.86	31.47
TraesCS5D01G459800.1	Wheat	nucleus, plastid	18.63	31.35
TraesCS5D01G286300.5	Wheat	nucleus	27.59	31.2
TraesCS5D01G300100.1	Wheat	nucleus	19.34	29.71
GSMUA_Achr3P10600_001	Banana	nucleus	31.6	29.07
TraesCS7D01G397300.1	Wheat	nucleus, plastid	20.99	28.16
Solyc04g005220.1.1	Tomato	nucleus	27.36	27.68
TraesCS6D01G253000.1	Wheat	nucleus	22.41	26.84
TraesCS7D01G213500.1	Wheat	nucleus	27.83	26.82
TraesCS3D01G417300.2	Wheat	nucleus	29.95	26.51
TraesCS7D01G264600.3	Wheat	nucleus	20.28	25.67
TraesCS2D01G274600.1	Wheat	nucleus	22.41	23.17

Protein Annotations

EnsemblPlants:TraesCS5D01G258300.1	EnsemblPlantsGene:TraesCS5D01G258300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF182	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr5D:+:364744692..364747097

Molecular Weight (calculated)

44374.9 Da

IEP (calculated)

6.840

GRAVY (calculated)

-0.583

Length

424 amino acids

Sequence
(BLAST)

001: MDMNESSEKG MEGNGSSGPG GGIPVEWQSQ FSGGGFSAHQ HQHPHMMDSF ASGMWSAASQ HGAGFLAPVP GFLPPPGLGG HFPVDSGFIE RAARSSCFVG
101: PGAGGGMMGA GAYGGAGDQH MGSAFGEGYL DHRRKEGGDK AEPELAGSGG VPSSEAAGGD CSSKGSDSKK RRRPSEAMGG GDQVQSSNVA ADSANESAQS
201: KDKGEESSPA TGTTTGGKSK GKGAKESSEK EDYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS
301: MKLATVNPRL DLNIEGLLSK DLLRFPGVSS SSMGFSPEMM HPQLQLSQPG LMQGGAAAMA NSDVFRRIMQ AQLGAKDGSH SQMAHALNGP FSDHVAQMAY
401: PSMGSSHSHS QDLSIRPSQD AYQM

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.