Factsheet for TraesCS3D01G417300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G457400.1	Wheat	nucleus	95.82	96.84
TraesCS3A01G421400.1	Wheat	nucleus	85.59	93.82
Os01t0915600-01	Rice	nucleus	76.83	76.51
EES04098	Sorghum	nucleus	76.41	75.62
Zm00001d042373_P002	Maize	nucleus	72.23	74.73
Zm00001d012067_P003	Maize	nucleus	71.82	71.67
HORVU3Hr1G093310.2	Barley	nucleus, plasma membrane, plastid	93.95	70.75
TraesCS4D01G058900.1	Wheat	nucleus	24.22	36.71
TraesCS2D01G274600.1	Wheat	nucleus	30.69	35.85
TraesCS5D01G459800.1	Wheat	nucleus, plastid	18.58	35.32
TraesCS7D01G257000.2	Wheat	nucleus	27.14	33.59
PGSC0003DMT400053639	Potato	nucleus	33.4	32.52
Solyc09g057710.2.1	Tomato	nucleus	32.15	32.49
TraesCS6D01G253000.1	Wheat	nucleus	22.55	30.51
TraesCS5D01G258300.1	Wheat	nucleus	26.51	29.95
TraesCS5D01G286300.5	Wheat	nucleus	23.17	29.6
TraesCS5D01G300100.1	Wheat	nucleus	16.49	28.62
GSMUA_Achr10P...	Banana	nucleus	24.63	27.9
TraesCS7D01G264600.3	Wheat	nucleus	19.21	27.46
GSMUA_Achr7P22770_001	Banana	nucleus	25.05	27.15
TraesCS7D01G397300.1	Wheat	nucleus, plastid	17.75	26.9
TraesCS7D01G213500.1	Wheat	nucleus	23.38	25.45
GSMUA_Achr4P16120_001	Banana	nucleus	23.38	24.51
GSMUA_Achr7P02770_001	Banana	nucleus	24.63	24.18

Protein Annotations

EnsemblPlants:TraesCS3D01G417300.2	EnsemblPlantsGene:TraesCS3D01G417300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF169	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr3D:+:528956889..528959109

Molecular Weight (calculated)

50231.0 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.583

Length

479 amino acids

Sequence
(BLAST)

001: MNCGPPDQLP PATAGFLNLN WDSSMDASAG GRPSPASGSA AATEGLALHG ISPRPQQHYG AGTPLGSPTK LNLSMMGQYR HHNHHYPTPP PPQVGGLPTL
101: ENLMPMASLD QFLADPGFAE RAARLSGFDA RGGYGAGPPQ FGLPDDGPVG ALKELELGSA RDDSSVSDPA SAGAGMALKG ASDGNARKRK AAGGSKGKGK
201: DASVSTTSAK DLLAKEDSAS KRCKSTSMED AEENSGKGKA AQSSSENGGR KQGKDGASKL PEPPKDFIHV RARRGEATDS HSLAERVRRE KISQRMKLLQ
301: DLVPGCNKVV GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLDFNNLP SLLAKDMQQQ SCGQLQQGSS HFPLDASGAP LPYMGQGSGD PLGCGMSDGG
401: GMGDDQGAMH PVDQAFCRPM GSSQQQQHFL SDAASQVGAF WQDLQSVVQM DMGQSQEIAT SSNSYDAGSL QTVHMKMEL

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.