Factsheet for Zm00001d012067_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04098	Sorghum	nucleus	87.71	86.98
Zm00001d042373_P002	Maize	nucleus	80.42	83.37
Os01t0915600-01	Rice	nucleus	80.21	80.04
TraesCS3A01G421400.1	Wheat	nucleus	65.83	72.31
TraesCS3B01G457400.1	Wheat	nucleus	71.25	72.15
TraesCS3D01G417300.2	Wheat	nucleus	71.67	71.82
HORVU3Hr1G093310.2	Barley	nucleus, plasma membrane, plastid	70.83	53.46
Zm00001d007768_P001	Maize	nucleus	18.54	35.46
Zm00001d021019_P001	Maize	nucleus	25.62	34.75
Zm00001d033870_P001	Maize	nucleus	23.33	34.67
Zm00001d034503_P002	Maize	nucleus	18.33	34.51
Zm00001d006065_P002	Maize	nucleus	24.79	34.0
PGSC0003DMT400053639	Potato	nucleus	34.79	33.94
Solyc09g057710.2.1	Tomato	nucleus	33.33	33.76
Zm00001d007311_P001	Maize	nucleus	30.83	32.1
Zm00001d031561_P002	Maize	nucleus	25.42	31.2
Zm00001d051569_P001	Maize	nucleus	21.67	30.41
GSMUA_Achr10P...	Banana	nucleus	26.67	30.26
Zm00001d049158_P001	Maize	nucleus	27.92	30.18
Zm00001d021086_P001	Maize	nucleus, plastid	17.92	29.97
Zm00001d020826_P001	Maize	nucleus	26.46	29.26
GSMUA_Achr7P22770_001	Banana	nucleus	26.25	28.51
Zm00001d017778_P001	Maize	nucleus	22.5	28.12
Zm00001d005964_P002	Maize	nucleus	26.46	28.04
Zm00001d049870_P001	Maize	nucleus	18.12	27.27
Zm00001d013357_P001	Maize	nucleus	19.58	27.01
Zm00001d031665_P001	Maize	mitochondrion	17.08	26.03
Zm00001d006110_P002	Maize	nucleus, plastid	17.29	25.86
Zm00001d046759_P001	Maize	plastid	18.54	25.0
Zm00001d036807_P001	Maize	nucleus	19.17	24.86
GSMUA_Achr4P16120_001	Banana	nucleus	22.71	23.85
GSMUA_Achr7P02770_001	Banana	nucleus	23.33	22.95

Protein Annotations

EntrezGene:100502193	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ProteinID:AQK98734.1	ProteinID:AQK98735.1
EMBL:BT087345	UniProt:C4J948	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EMBL:KJ726858	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF169	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001A4C5C7	EnsemblPlantsGene:Zm00001d012067
EnsemblPlants:Zm00001d012067_P003	EnsemblPlants:Zm00001d012067_T003	InterPro:bHLH_dom	SEG:seg	:	:

Description

bHLH-transcription factor 55Transcription factor bHLH62

Coordinates

chr8:+:167566134..167569229

Molecular Weight (calculated)

50525.4 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.569

Length

480 amino acids

Sequence
(BLAST)

001: MNCGPPDQLP PGSAPSCFLN LNWDQSMAAD QLDPALSSMV SSPASNSTAA AAVTDGRALH GISPQQQYGG TPLSSPPKLN LFHQTRPQFH HFPPPQVGGL
101: PILENLMPMG HLDQFLADPG FAERAARLSG FDGRPGGSGY GGVGVPGQFG IPDAGPIGAL KELELGNGRD ESSVSDPASG SAEMALNKGP SDGNAKKRKA
201: SGKGKGKDGP GSAAAGAAKE ESSGKRCRSA DESSGAEDNN PTTKGKAAQS SSENGGGRKQ QGKESATKPP AEAPKDYIHV RARRGEATDS HSLAERVRRE
301: KISQRMKLLQ DLVPGCNKVV GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLDFNSLP NLLLPKDIHQ PCGPPHFPLE TSGAPLPYLS QPHHGSPLGC
401: CMDTQGGSMH PLDAAFCRPM NPQHPFLNGA SDAASQVGTF WQDDLQSVVH MDIGQSQEIA PTSSNSYNGS LQTVHMKMEL

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.