Factsheet for Bra004348.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95974	Canola	nucleus	97.27	96.66
CDY33568	Canola	nucleus	93.7	92.53
Bra038336.1-P	Field mustard	plastid	65.34	85.21
VIT_01s0010g00740.t01	Wine grape	nucleus	44.12	44.78
PGSC0003DMT400050585	Potato	nucleus	45.59	41.73
Solyc05g010610.2.1	Tomato	nucleus	45.17	41.59
KRH75189	Soybean	nucleus	46.64	40.36
GSMUA_Achr6P36210_001	Banana	nucleus	23.32	40.36
KRH71031	Soybean	nucleus	46.64	40.29
PGSC0003DMT400022704	Potato	nucleus	44.75	39.81
PGSC0003DMT400004830	Potato	nucleus	38.03	39.09
Solyc01g010130.2.1	Tomato	nucleus	43.49	38.55
TraesCS5D01G258300.1	Wheat	nucleus	33.82	37.97
TraesCS5B01G248600.1	Wheat	nucleus	33.82	37.97
TraesCS5A01G250600.1	Wheat	nucleus	33.82	37.88
Os09t0474100-01	Rice	nucleus	34.03	37.85
GSMUA_Achr8P24490_001	Banana	nucleus	32.35	37.2
KXG35834	Sorghum	nucleus	34.03	37.07
Zm00001d020826_P001	Maize	nucleus	33.61	36.87
Bra037059.1-P	Field mustard	nucleus	21.85	36.36
Solyc04g005220.1.1	Tomato	nucleus	31.93	36.28
Zm00001d005964_P002	Maize	nucleus	33.19	34.88
Bra031700.1-P	Field mustard	nucleus	23.95	34.86
Os06t0275600-01	Rice	cytosol, nucleus	31.93	34.78
Bra019935.1-P	Field mustard	nucleus	19.54	34.7
Bra028335.1-P	Field mustard	nucleus	23.95	34.34
Bra018461.1-P	Field mustard	nucleus	23.11	34.16
GSMUA_Achr9P18510_001	Banana	nucleus	21.85	33.33
Bra003300.1-P	Field mustard	nucleus	22.06	32.61
GSMUA_Achr9P28060_001	Banana	nucleus	20.8	32.35
Bra014972.1-P	Field mustard	nucleus	22.27	32.22
Bra019962.1-P	Field mustard	nucleus	22.9	32.15
Bra011540.1-P	Field mustard	nucleus	22.06	32.01
Bra034636.1-P	Field mustard	nucleus	18.7	31.67
Bra022753.1-P	Field mustard	nucleus	19.54	31.31
Bra004679.1-P	Field mustard	nucleus	19.75	31.13
Bra014603.1-P	Field mustard	nucleus	22.27	30.64
Bra007358.1-P	Field mustard	nucleus	22.06	29.33
Bra020691.1-P	Field mustard	nucleus	26.47	28.31
OQU81018	Sorghum	nucleus	22.27	28.27
Bra029640.1-P	Field mustard	nucleus, plastid	25.63	27.48
GSMUA_Achr3P10600_001	Banana	nucleus	26.26	27.11
HORVU0Hr1G020200.1	Barley	nucleus	24.16	26.14
Bra037478.1-P	Field mustard	nucleus	26.89	26.12
TraesCS7A01G211900.1	Wheat	nucleus	23.95	25.91
TraesCS7D01G213500.1	Wheat	nucleus	23.95	25.91
TraesCS7B01G118800.1	Wheat	nucleus	23.53	25.45
Os08t0487700-00	Rice	nucleus	17.02	23.62

Protein Annotations

EnsemblPlants:Bra004348.1	EnsemblPlants:Bra004348.1-P	EnsemblPlantsGene:Bra004348	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00025417C6	UniProt:M4CJG4	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

AT1G68920 (E=1e-163) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA07:+:18155910..18157937

Molecular Weight (calculated)

51532.6 Da

IEP (calculated)

5.102

GRAVY (calculated)

-0.842

Length

476 amino acids

Sequence
(BLAST)

001: MDVSEKDELR NGDDTTVNYD ESANNPPPDW RVSGSNPVSD SYPTENLMME TLWYDPTNVQ AVGYGGFNGG GNASSSSSFR GNIDRSLEMG WSLPNLLPPK
101: GGNGMFLPNA SSFLPPSMAQ FPADSGFIER AARFSLFSGG SFSEMMNQQQ PLGNPESVGL FLQGQCTSNE VNVVGVAHND ASAGMKETNV RSSEQGNKQN
201: VSEDTQSSGG KGGETSSKGF DSKKRKRNKQ NAEADQSQRS QQSEEEADNN GGGDKKRNDE QSPNSQGNKT NSGKQQGKQT SDPKDGYIHV RARRGQATNS
301: HSLAERVRRE KISERMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQMDFNLEG LLAKDALQLR AGTSSATPFP PNMPMVYPPL
401: PHGFMQQTLS SMGRNISSPL SPPINGGYKR QETNGWEGDL QNVIHINYGA GDVPPDSQAA AATEASLPSS NMKVEP

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.