Factsheet for Bra029640.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35923	Canola	nucleus, plastid	97.97	97.1
CDY28061	Canola	nucleus	95.95	94.04
AT3G07340.1	Thale cress	nucleus	73.87	71.93
Bra020691.1-P	Field mustard	nucleus	56.76	56.63
Bra037478.1-P	Field mustard	nucleus	60.14	54.49
KRG99606	Soybean	nucleus	51.58	39.48
KRH46615	Soybean	nucleus	50.45	38.23
KRH07417	Soybean	nucleus, plastid	50.45	38.03
KRH66158	Soybean	nucleus, plastid	50.45	37.71
Bra037059.1-P	Field mustard	nucleus	23.42	36.36
Bra019935.1-P	Field mustard	nucleus	21.62	35.82
Bra022753.1-P	Field mustard	nucleus	23.42	35.02
Bra028335.1-P	Field mustard	nucleus	25.9	34.64
Bra014972.1-P	Field mustard	nucleus	25.23	34.04
Bra034636.1-P	Field mustard	nucleus	20.72	32.74
Bra003300.1-P	Field mustard	nucleus	23.2	31.99
Bra038336.1-P	Field mustard	plastid	25.9	31.51
Bra014603.1-P	Field mustard	nucleus	24.32	31.21
Bra004679.1-P	Field mustard	nucleus	20.72	30.46
Bra011540.1-P	Field mustard	nucleus	22.3	30.18
Bra007358.1-P	Field mustard	nucleus	24.32	30.17
Bra018461.1-P	Field mustard	nucleus	21.62	29.81
Bra031700.1-P	Field mustard	nucleus	21.85	29.66
Bra019962.1-P	Field mustard	nucleus	22.3	29.2
Bra004348.1-P	Field mustard	nucleus	27.48	25.63

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra029640	EnsemblPlants:Bra029640.1	EnsemblPlants:Bra029640.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4ELH2	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002547FAD	InterPro:bHLH_dom	SEG:seg

Description

AT3G07340 (E=1e-131) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA05:+:22855054..22857068

Molecular Weight (calculated)

48509.5 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.628

Length

444 amino acids

Sequence
(BLAST)

001: MDNELFMNAG VLSHPSEMTS LSSSSPPAML NWASMETHPL EQSISRNVPR DCFFVEKSTL SSLVSPPSEP NFSGGGAGEN YVIRELVGNL GNIGDIYGAP
101: ASFGNGSGSC YATPVMSSPP LDAFSGDSRF AERAARFSCL GSRSFNGRRT NGPVAETASI NGELTRVSSN SALKPPAGES SGESSRKRKA KSKEHSPSTA
201: SPSPNLSKEV EGKEDSDSKR SKKSQENGEN TKSLDPYKDF IHVRARRGQA TDSHSLAERV RREKISERMK LLQELVPGCN KVTGKALMLD EIINYVQSLQ
301: RQVEFLSMKL SSVNTRLDFN MDALMSKDIF PSSNNQQVPQ LESSSHILLA DHHSHTLQLN PNDSSNNIIN PMETSESRSF TTRLPTLAHF TDSISQFSTF
401: SEDDLHSIIH MGLAQNQIRE PNQVHSTSFQ GPSNQVPSHM KAEL

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.