Factsheet for Bra022753.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84885	Canola	nucleus	99.66	99.66
AT5G50915.2	Thale cress	nucleus	69.7	72.38
PGSC0003DMT400069568	Potato	nucleus	35.35	36.97
VIT_01s0244g00010.t01	Wine grape	nucleus	32.66	35.93
EES14175	Sorghum	nucleus	34.68	35.15
EER99171	Sorghum	nucleus	33.0	34.88
TraesCS5D01G300100.1	Wheat	nucleus	32.32	34.78
HORVU7Hr1G055180.4	Barley	nucleus, plastid	34.34	34.69
TraesCS5B01G292100.1	Wheat	nucleus	31.99	34.42
HORVU5Hr1G077390.1	Barley	nucleus	32.32	34.41
Os09t0510500-01	Rice	nucleus	32.66	34.4
Solyc06g072520.1.1	Tomato	nucleus, plastid	33.33	34.26
TraesCS5A01G292900.1	Wheat	nucleus	32.32	34.16
Zm00001d021086_P001	Maize	nucleus, plastid	32.66	33.8
Solyc03g097820.1.1	Tomato	nucleus	37.37	33.64
GSMUA_Achr10P...	Banana	nucleus	31.31	33.57
KRH54121	Soybean	nucleus	38.72	32.95
KRH63842	Soybean	nucleus	38.05	32.66
PGSC0003DMT400051137	Potato	nucleus	37.04	32.54
VIT_17s0000g00430.t01	Wine grape	nucleus	38.05	32.38
Os08t0536800-01	Rice	cytosol, nucleus, plastid	33.67	32.36
Zm00001d049870_P001	Maize	nucleus	34.34	31.97
Zm00001d031665_P001	Maize	mitochondrion	33.67	31.75
Bra014972.1-P	Field mustard	nucleus	34.68	31.31
Bra019935.1-P	Field mustard	nucleus	27.95	30.97
TraesCS7A01G263700.1	Wheat	nucleus	32.32	30.97
TraesCS7D01G264600.3	Wheat	nucleus	34.34	30.45
TraesCS7B01G161700.3	Wheat	nucleus, plastid	34.34	30.45
Zm00001d006110_P002	Maize	nucleus, plastid	32.66	30.22
Bra037059.1-P	Field mustard	nucleus	28.96	30.07
Bra028335.1-P	Field mustard	nucleus	33.33	29.82
KRH41084	Soybean	nucleus	34.01	29.79
KRH59766	Soybean	nucleus	34.01	29.53
Bra034636.1-P	Field mustard	nucleus	27.61	29.18
Bra018461.1-P	Field mustard	nucleus	30.3	27.95
Bra011540.1-P	Field mustard	nucleus	30.3	27.44
Bra031700.1-P	Field mustard	nucleus	29.63	26.91
Bra019962.1-P	Field mustard	nucleus	29.97	26.25
Bra004679.1-P	Field mustard	nucleus	26.26	25.83
Bra003300.1-P	Field mustard	nucleus	27.95	25.78
GSMUA_Achr2P21460_001	Banana	nucleus	32.32	24.81
Bra014603.1-P	Field mustard	nucleus	28.62	24.57
Bra038336.1-P	Field mustard	plastid	29.29	23.84
Bra007358.1-P	Field mustard	nucleus	28.62	23.74
Bra029640.1-P	Field mustard	nucleus, plastid	35.02	23.42
Bra020691.1-P	Field mustard	nucleus	34.34	22.92
Bra037478.1-P	Field mustard	nucleus	37.37	22.65
Bra004348.1-P	Field mustard	nucleus	31.31	19.54

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra022753	EnsemblPlants:Bra022753.1	EnsemblPlants:Bra022753.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009719	GO:GO:0009739
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4E1V3	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025401C0
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

AT5G50915 (E=5e-104) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA03:+:6825685..6827181

Molecular Weight (calculated)

32601.2 Da

IEP (calculated)

8.645

GRAVY (calculated)

-0.630

Length

297 amino acids

Sequence
(BLAST)

001: MASFSYFQHY PHSLLDPLLF SSPNSSTKLS GFIDQNPLYP PPNISTIVDT SLNPFLDSFN VEKTESSDVK KQINTNATAA LTGDQLSPGP STTSAGKKQR
101: RKTRNGSKSK EGVEGRKSKK PRNGSISTDV KVKRASEQEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMRTLQNLV PGCDKVTGKA LMLDEIINYV
201: QSLQNQVEFL SMKLASISPV VYDFGSDLDG IIVRPEMGSA DVGTSFANAM PTTTTNFSSL LDDSILPAEA HLQEDGGERE KTVDRSGFNN NSFCSFS

Best Arabidopsis Sequence Match ( AT5G50915.1 )
(BLAST)

001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQEEGEEREN FVDRSGFNNN NFCSFP

Arabidopsis Description

BHLH137Transcription factor bHLH137 [Source:UniProtKB/Swiss-Prot;Acc:Q93W88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.