CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41084	Soybean	nucleus	85.67	86.43
KRH54121	Soybean	nucleus	65.79	64.47
KRH63842	Soybean	nucleus	64.62	63.87
VIT_17s0000g00430.t01	Wine grape	nucleus	54.09	53.01
Solyc06g072520.1.1	Tomato	nucleus, plastid	40.94	48.44
PGSC0003DMT400069568	Potato	nucleus	38.89	46.83
Solyc03g097820.1.1	Tomato	nucleus	42.69	44.24
PGSC0003DMT400051137	Potato	nucleus	42.98	43.49
GSMUA_Achr5P24960_001	Banana	nucleus	23.1	42.93
EES14175	Sorghum	nucleus	35.67	41.64
TraesCS5D01G300100.1	Wheat	nucleus	32.75	40.58
HORVU5Hr1G077390.1	Barley	nucleus	33.04	40.5
HORVU7Hr1G055180.4	Barley	nucleus, plastid	34.8	40.48
TraesCS5B01G292100.1	Wheat	nucleus	32.46	40.22
TraesCS5A01G292900.1	Wheat	nucleus	33.04	40.21
EER99171	Sorghum	nucleus	32.75	39.86
Os09t0510500-01	Rice	nucleus	32.46	39.36
Zm00001d021086_P001	Maize	nucleus, plastid	32.16	38.33
Os08t0536800-01	Rice	cytosol, nucleus, plastid	33.63	37.22
Zm00001d031665_P001	Maize	mitochondrion	34.21	37.14
TraesCS7A01G263700.1	Wheat	nucleus	32.75	36.13
TraesCS7D01G264600.3	Wheat	nucleus	35.38	36.12
TraesCS7B01G161700.3	Wheat	nucleus, plastid	35.09	35.82
AT5G50915.2	Thale cress	nucleus	29.53	35.31
Zm00001d049870_P001	Maize	nucleus	32.16	34.48
CDY45806	Canola	nucleus	29.53	34.47
KRH56987	Soybean	plastid	22.51	34.38
Zm00001d006110_P002	Maize	nucleus, plastid	32.16	34.27
Bra022753.1-P	Field mustard	nucleus	29.53	34.01
CDX84885	Canola	nucleus	29.24	33.67
KRH03393	Soybean	nucleus	22.22	33.19
KRH69414	Soybean	nucleus	23.98	32.16
KRH63442	Soybean	nucleus	22.51	31.69
KRH69415	Soybean	nucleus	23.98	31.54
KRH45811	Soybean	nucleus	24.27	30.4
KRH74729	Soybean	nucleus	23.39	30.3
KRH54478	Soybean	nucleus	22.81	29.0
Os05t0103000-01	Rice	nucleus	27.78	28.02
KRH52141	Soybean	nucleus	23.1	26.42
KRG95332	Soybean	nucleus	24.85	23.22
KRH24463	Soybean	nucleus	27.19	23.02
KRH51523	Soybean	nucleus	26.02	22.82
KRH29448	Soybean	nucleus	28.07	22.8
KRH33022	Soybean	nucleus	23.68	22.69
KRH71879	Soybean	nucleus	23.39	22.6
KRH61450	Soybean	nucleus	24.56	22.34
KRH15460	Soybean	nucleus	27.19	21.68
KRG88634	Soybean	nucleus, plastid	27.49	21.61
KRH67006	Soybean	nucleus	24.85	21.25
KRH60839	Soybean	nucleus	26.32	20.93
KRH75189	Soybean	nucleus	29.82	18.55
KRH07417	Soybean	nucleus, plastid	31.58	18.34
KRH71031	Soybean	nucleus	29.24	18.15
KRH66158	Soybean	nucleus, plastid	31.29	18.01
KRG99606	Soybean	nucleus	30.41	17.93
KRH46615	Soybean	nucleus	29.53	17.24

Protein Annotations

EntrezGene:100790417	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EMBL:ACUP02003341	EnsemblPlantsGene:GLYMA_05G201700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1K6R8
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH59766	ProteinID:KRH59766	ProteinID:KRH59766.1	ProteinID:KRH59767.1
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0001BA89FA	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:38531408..38534854

Molecular Weight (calculated)

38344.1 Da

IEP (calculated)

8.821

GRAVY (calculated)

-0.635

Length

342 amino acids

Sequence
(BLAST)

001: MAAFSSQYYH SFVVDSACFS ITPPIINTSS NFLPSPHYLH NNNIQETSYS VTDNKETSCF EQSSKVTISD IELSVVKNHS PETSMVVDKL EKGEQVTQKV
101: VTRMEKKRRA RNGSSSSDPL SKESTEGGKK KQKKPKEVTK DKKIGAEDPP TGYIHVRARR GQATDSHSLA ERVRREKISK RMTTLQRLVP GCDKVTGKAL
201: VLDEIINYVQ SLQNQVEFLS MKLASVNPMF FDSAMDLDTL MVRPDQKLSN IASPSPLPCV AQFRPHQAIA FADTITTPTT TTNSFPTANN DGYLLDYSSS
301: LFLQGHRPNI FEDNGGQFWD VEDQRQKFLH PYRFGNNSGS FN

Best Arabidopsis Sequence Match ( AT3G23690.1 )
(BLAST)

001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P

Arabidopsis Description

BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.