CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92422	nucleus
KRH13218	nucleus
KRH34384	nucleus
KRH69122	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34530.1	KRG92422	AT1G04400.1	22739826
AT4G34530.1	KRH13218	AT1G04400.1	22739826
AT4G34530.1	KRH34384	AT1G04400.1	22739826
AT4G34530.1	KRH69122	AT1G04400.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29448	Soybean	nucleus	84.16	80.76
KRH51523	Soybean	nucleus	53.71	55.64
KRH60839	Soybean	nucleus	52.72	49.53
VIT_03s0038g04760.t01	Wine grape	nucleus	54.46	48.57
PGSC0003DMT400001888	Potato	nucleus	44.31	40.5
Solyc01g109700.2.1	Tomato	nucleus	43.07	40.09
Bra034636.1-P	Field mustard	nucleus	25.99	37.37
CDX76288	Canola	nucleus	23.02	37.2
Bra011540.1-P	Field mustard	nucleus	29.95	36.89
CDX75440	Canola	nucleus	29.7	36.47
KRH69414	Soybean	nucleus	23.02	36.47
KRH56987	Soybean	plastid	20.05	36.16
CDY17466	Canola	nucleus	24.75	35.97
KRH63442	Soybean	nucleus	21.29	35.39
KRH69415	Soybean	nucleus	22.77	35.38
KRH03393	Soybean	nucleus	20.05	35.37
KRH74729	Soybean	nucleus	23.02	35.23
AT4G34530.1	Thale cress	nucleus	29.21	35.22
KRH45811	Soybean	nucleus	23.27	34.43
CDX69067	Canola	nucleus	28.71	34.12
GSMUA_Achr6P09050_001	Banana	nucleus	25.74	32.91
KRH54478	Soybean	nucleus	21.29	31.97
TraesCS6D01G253000.1	Wheat	nucleus	26.73	30.51
TraesCS6B01G300400.1	Wheat	nucleus	26.49	30.48
Zm00001d051569_P001	Maize	nucleus	25.5	30.12
TraesCS6A01G273000.2	Wheat	nucleus	26.73	29.92
EES05656	Sorghum	nucleus	26.24	29.53
KRH63842	Soybean	nucleus	25.25	29.48
KRH54121	Soybean	nucleus	25.25	29.23
Os02t0705500-01	Rice	nucleus	25.99	29.09
KRH41084	Soybean	nucleus	24.01	28.61
HORVU6Hr1G068980.2	Barley	nucleus	27.23	28.5
Zm00001d017778_P001	Maize	nucleus	26.49	27.86
GSMUA_Achr10P...	Banana	nucleus	27.48	27.61
KRH59766	Soybean	nucleus	23.02	27.19
KRH52141	Soybean	nucleus	19.31	26.09
KRH71879	Soybean	nucleus	22.52	25.71
KRH33022	Soybean	nucleus	22.03	24.93
KRG99606	Soybean	nucleus	35.64	24.83
KRH46615	Soybean	nucleus	35.64	24.57
KRH61450	Soybean	nucleus	22.77	24.47
KRG95332	Soybean	nucleus	22.03	24.32
KRH07417	Soybean	nucleus, plastid	34.41	23.6
KRH66158	Soybean	nucleus, plastid	34.41	23.4
KRH15460	Soybean	nucleus	24.5	23.08
KRG88634	Soybean	nucleus, plastid	24.75	22.99
KRH67006	Soybean	nucleus	22.52	22.75
KRH75189	Soybean	nucleus	29.7	21.82
KRH71031	Soybean	nucleus	29.46	21.6

Protein Annotations

EntrezGene:100815751	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EMBL:ACUP02007176	EnsemblPlantsGene:GLYMA_12G042800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1LQ29
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH24463	ProteinID:KRH24463	ProteinID:KRH24463.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00023D0B6B
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:3091223..3093670

Molecular Weight (calculated)

44567.4 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.571

Length

404 amino acids

Sequence
(BLAST)

001: MLHCLNTSCS DITVLERQRE ATIKCQNHQP PYLTDFNAVF PSSSSSSSSS SSSSHSQGLL MMCSDSSLGQ VLTHSVKPDP GVWPEFGFLP AISRTCSRDG
101: DLVSPKENMA SGKENAKKRK PQNSKVVAEI DNNKDKDKRV KVTGEEGESK VTEHHTRNKN AKSNANKNNR ETSADTSKGS EVQNQKPDYI HVRARRGQAT
201: DSHSLAERVR REKISERMKY LQDLIPGCNK VAGKAGMLDE IINYVQSLQR QVEFLSMKLA AVNPRLDFNI DELFAKEVFP SCAQSFPNIG IPSDMSISNN
301: PSYLQFNSAQ QLVSCCGGLI NSMGISPPNM GLRTNIISTS TVPLPETFLD SSCFAQILPS SNWEGGDFQS LYNVAFDQGR TASFPPQPFT GSYKFVTCQN
401: HFFP

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.