CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92422
KRH11936
KRH13218
KRH14801
KRH22086
KRH24463
KRH26155
KRH27246
KRH29448
KRH34384
KRH36969
KRH51523
KRH55271
KRH55275
KRH60839
KRH69122
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	KRG92422	AT1G04400.1	15805487
AT1G04400.1	KRH13218	AT1G04400.1	15805487
AT1G04400.1	KRH34384	AT1G04400.1	15805487
AT1G04400.1	KRH69122	AT1G04400.1	15805487
AT1G04400.1	KRH22086	AT1G53090.1	22739826
AT1G04400.1	KRH26155	AT1G53090.1	22739826
AT1G04400.1	KRH27246	AT1G53090.1	22739826
AT1G04400.1	KRH55271	AT1G53090.1	22739826
AT1G04400.1	KRH55275	AT1G53090.1	22739826
AT1G04400.1	KRH11936	AT2G18790.1	11089975
AT1G04400.1	KRH36969	AT2G18790.1	11089975
AT1G04400.1	KRH14801	AT2G32950.1	11509693
AT1G04400.1	KRH73341	AT2G32950.1	11509693
AT1G04400.1	KRH14801	AT2G32950.1	22739826
AT1G04400.1	KRH73341	AT2G32950.1	22739826
AT1G04400.1	KRH24463	AT4G34530.1	22739826
AT1G04400.1	KRH29448	AT4G34530.1	22739826
AT1G04400.1	KRH51523	AT4G34530.1	22739826
AT1G04400.1	KRH60839	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92422	Soybean	cytosol	93.93	95.11
KRH69122	Soybean	cytosol	72.59	77.67
CDX89827	Canola	cytosol, mitochondrion	47.98	70.97
VIT_05s0049g00960.t01	Wine grape	cytosol	70.41	69.97
CDY18229	Canola	cytosol, mitochondrion	60.9	67.88
Bra015313.1-P	Field mustard	cytosol	60.59	67.42
Solyc09g090100.2.1	Tomato	cytosol	66.51	67.24
AT1G04400.1	Thale cress	cytosol	63.08	66.18
PGSC0003DMT400044219	Potato	cytosol	66.51	66.0
CDX86636	Canola	cytosol	63.24	65.59
Bra030568.1-P	Field mustard	cytosol	63.24	65.59
KRH13218	Soybean	extracellular	8.57	65.48
CDY15503	Canola	cytosol	62.93	65.06
GSMUA_Achr5P18570_001	Banana	cytosol	61.68	59.19
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	58.1	56.86
Os02t0625000-01	Rice	cytosol	57.63	56.84
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	57.63	56.66
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	57.48	56.51
TraesCS6B01G257600.2	Wheat	cytosol	57.01	56.31
HORVU6Hr1G058740.2	Barley	cytosol	56.85	55.64
EER88355	Sorghum	mitochondrion	56.39	55.35
Zm00001d045944_P007	Maize	cytosol	55.92	54.89
KRH62344	Soybean	cytosol	54.21	51.1
KRH53063	Soybean	cytosol	54.21	51.03
KRH16735	Soybean	cytosol	54.05	50.95
KRH18908	Soybean	cytosol	53.74	50.66
KRH44412	Soybean	mitochondrion, plastid	22.12	25.22
KRH61917	Soybean	plastid	20.25	22.26
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	12.62	18.41
KRH69286	Soybean	plastid	12.77	17.63

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	EntrezGene:100233234	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	UniProt:A0A0R0HV48
EMBL:ACUP02006594	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln
InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	EnsemblPlantsGene:GLYMA_10G180600	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987
GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729	EnsemblPlants:KRH34384	ProteinID:KRH34384	ProteinID:KRH34384.1
PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766
UniParc:UPI0003DEBF6F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:41417292..41422568

Molecular Weight (calculated)

73055.8 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.439

Length

642 amino acids

Sequence
(BLAST)

001: MGSNRTIVWF RRDLRIEDNP ALTAAAKEGS VLPVYVWCPK EEGQFYPGRV SRWWLKQSLA HLDQSLKSLG SRLVLIKTHS TAVALVECVK AIQATKVVFN
101: HLYDPVSLVR DHNIKEKLVE QGISVQSYNG DLLYEPWEVN SESGRAFTTF NAFWKKCLHM QMDIVSVVPP WQLIPAEGKI EECSLEELGL ENESEKPSNA
201: LLGRAWSPGW RNADKALREF VELHLLHYSK KRLKVGGEST SLLSPYLHFG ELSARKVFQV TCMKQILWTN EGNSAGEESA NLFLRAIGLR EYSRYLCFNF
301: PFTHERALLG HLKFFPWNPD PDIFKTWRQG RTGFPLVDAG MRELWATGWI HNRIRVIVSS FAVKMLLLPW KWGMKYFWDT LLDADLESDI LGWQYISGGL
401: PDGHELERLD NPEIQGAKFD PEGEYVRQWL PELARMPTEW IHHPWDAPLT VLRAAGVELG QNYPKPIIDI DLARERLTEA IFKMWESEAA AKAAGSEPRD
501: EVVVDNSHTV ENLDTQKVVV LGKAPCATIS ANDQKVPALQ DSKNEPPTRK RPKHMIEEGQ NQDHSQNHNK DTGLSSIDQD ICSTADSSSC KKQCASTSSY
601: SFSVPQQCSS SSNLKWPWQE KIDMEQSSSK DGKYILTFPR DL

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.