CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05990.t01	Wine grape	mitochondrion	74.6	78.07
Solyc12g042910.1.1	Tomato	mitochondrion	72.65	75.88
PGSC0003DMT400073684	Potato	mitochondrion	72.47	75.7
AT3G15620.1	Thale cress	mitochondrion	70.52	71.4
GSMUA_Achr8P26060_001	Banana	cytosol	65.9	71.21
CDY20139	Canola	cytosol, nucleus, plastid	70.52	70.77
Bra021122.1-P	Field mustard	cytosol	41.03	70.43
CDY21853	Canola	mitochondrion, plastid	70.52	70.39
Os02t0204400-00	Rice	plastid	63.94	65.34
EES04723	Sorghum	cytosol, plastid	63.77	65.27
TraesCS6D01G167100.1	Wheat	plastid	62.17	64.22
TraesCS6A01G177000.2	Wheat	mitochondrion, plastid	61.99	62.88
HORVU6Hr1G037460.6	Barley	plastid	62.34	60.73
Zm00001d015724_P001	Maize	plastid	38.54	59.62
KRG92422	Soybean	cytosol	25.22	22.4
KRH34384	Soybean	cytosol	25.22	22.12
KRH69122	Soybean	cytosol	23.45	22.0
KRH61917	Soybean	plastid	22.56	21.75
KRH53063	Soybean	cytosol	25.75	21.26
KRH62344	Soybean	cytosol	25.58	21.15
KRH16735	Soybean	cytosol	25.22	20.85
KRH18908	Soybean	cytosol	25.04	20.7
KRH13218	Soybean	extracellular	2.84	19.05
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	13.14	16.82
KRH69286	Soybean	plastid	13.5	16.34

Protein Annotations

Gene3D:1.10.579.10	EntrezGene:100780347	MapMan:14.9.1	Gene3D:3.40.50.620	EMBL:ACUP02004928	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:DNA_photolyase_N	EnsemblPlantsGene:GLYMA_08G209600	InterPro:IPR006050	InterPro:IPR014729
UniProt:K7L7W1	EnsemblPlants:KRH44412	ProteinID:KRH44412	ProteinID:KRH44412.1	PFAM:PF00875	PFAM:PF03441
PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF9	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
UniParc:UPI000294C31D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:16974336..16978896

Molecular Weight (calculated)

63935.9 Da

IEP (calculated)

8.796

GRAVY (calculated)

-0.384

Length

563 amino acids

Sequence
(BLAST)

001: MLRKGANPMI LFKPSSAMRL SPCANTTSMS SGSGSLLWFR KGLRIHDNPA LEVASRGASH LYPVFVIDPH FMEPDPNSSA PGSSRAGLNR IKFLLECLVD
101: LDLNLKNLGS RLLILKGDPA EVVIRCLKEL HVKKLCFEYD TEPYYQALDV KVKNFALAAG IEVFSPVSHT LFNPTDIIEK NGGKPPLSYQ SFVKLAGEPP
201: SSLSTVYSSL PPVGNLGSCD ISEVPTIRDL GYGDAEQDEF SPFKGGESEA LKRLDECMKD KKWVANFEKP KGNPSAFLKP ATTVLSPYLK FGCLSPRYFY
301: QSIQDVYKSM PKHTLPPVSL IGQLLWREFF YTAAFGTPNF DRMKGNRICK QIPWKDDDKL LEAWREARTG FPWIDAIMVQ LRKWGWMHHL ARHSVACFLT
401: RGDLFVHWEK GRDVFERLLI DSDWAINNGN WMWLSCSSFF YQYNRIYSPT TFGKKYDPNG DYIRHFLPVL KDMPREYIYE PWTAPKSIQT KANCIIGKDY
501: PMPVVSHDSA SKECRRKMGE AYALNKELNG LVSEDDLKNL RRKLDESEGQ EAGAKRYKQQ LIG

Best Arabidopsis Sequence Match ( AT3G15620.1 )
(BLAST)

001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG
101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS
201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI
301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI
401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQFNRI YSPISFGKKY DPDGKYIRHF LPVLKDMPKQ YIYEPWTAPL SVQTKANCIV GKDYPKPMVL
501: HDSASKECKR KMGEAYALNK KMDGKVDEEN LRDLRRKLQK DEHEESKIRN QRPKLK

Arabidopsis Description

UVR3(6-4)DNA photolyase [Source:UniProtKB/Swiss-Prot;Acc:O48652]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.