Factsheet for Zm00001d015724_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04723	Sorghum	cytosol, plastid	90.11	59.64
Os02t0204400-00	Rice	plastid	81.87	54.08
TraesCS6D01G167100.1	Wheat	plastid	80.77	53.95
TraesCS6A01G177000.2	Wheat	mitochondrion, plastid	80.49	52.79
HORVU6Hr1G037460.6	Barley	plastid	80.49	50.69
GSMUA_Achr8P26060_001	Banana	cytosol	66.21	46.26
VIT_09s0002g05990.t01	Wine grape	mitochondrion	60.99	41.26
PGSC0003DMT400073684	Potato	mitochondrion	57.97	39.15
Solyc12g042910.1.1	Tomato	mitochondrion	57.69	38.96
KRH44412	Soybean	mitochondrion, plastid	59.62	38.54
CDY20139	Canola	cytosol, nucleus, plastid	58.24	37.79
CDY21853	Canola	mitochondrion, plastid	57.42	37.06
AT3G15620.1	Thale cress	mitochondrion	56.32	36.87
Bra021122.1-P	Field mustard	cytosol	24.18	26.83
Zm00001d029105_P001	Maize	plastid	20.33	16.59
Zm00001d047501_P001	Maize	plastid	20.05	16.37
Zm00001d046935_P001	Maize	plastid	21.15	14.26
Zm00001d015045_P001	Maize	cytosol	6.87	13.37
Zm00001d005288_P001	Maize	cytosol	6.04	12.79
Zm00001d015419_P001	Maize	cytosol	5.77	12.73
Zm00001d028434_P001	Maize	cytosol	6.32	12.57
Zm00001d016915_P002	Maize	cytosol, plastid	24.18	12.45
Zm00001d003477_P001	Maize	cytosol	23.35	12.35
Zm00001d050850_P001	Maize	cytosol	23.63	12.16
Zm00001d045944_P007	Maize	cytosol	20.05	11.16

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:14.9.1	Gene3D:3.40.50.620	UniProt:A0A1D6H3E6	ProteinID:AQK69358.1
InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0016829	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF9	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	UniParc:UPI0008444FC4
EnsemblPlantsGene:Zm00001d015724	EnsemblPlants:Zm00001d015724_P001	EnsemblPlants:Zm00001d015724_T001	SEG:seg	:	:

Description

(6-4)DNA photolyase

Coordinates

chr5:-:113204814..113207150

Molecular Weight (calculated)

40553.9 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.239

Length

364 amino acids

Sequence
(BLAST)

001: MEAATAATAA MMWFRKGLRV HDNPALDAAR RHGAGAASAR LYPVFVLDPR YLRPDAVAAS PGSARAGVAR IRFLLESLSD LDARLRRLGS RLLLLRARDD
101: VADAVCAALK DWNIGKLCFE SDTEPYALAR DKKVTDFALA SGIEVLTPVS HTLFDPEEII KKVFETRMLI IQNGGRPPLT YQSFVSIAGE PPAPAMEEYS
201: ELPPLGDTGE YELLPVPTVE ELGYGDISQE EIPPFHGGET EALRRMKESL QNKEWVAKFE KPKGDPSAFV KPSTTVLSPY LKDVHRSVRN HTKPPVSLTG
301: QLLWRDFFYT VSYGTPNFDR MKGNKICKQL RNWGWMHHLA RHSVACFLTR GDMVCPVICK ACIE

Best Arabidopsis Sequence Match ( AT3G15620.2 )
(BLAST)

001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG
101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS
201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI
301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI
401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQALSP FCFSF

Arabidopsis Description

UVR3(6-4)DNA photolyase [Source:UniProtKB/Swiss-Prot;Acc:O48652]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.