CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015724_P001	Maize	plastid	59.64	90.11
Os02t0204400-00	Rice	plastid	86.55	86.39
TraesCS6D01G167100.1	Wheat	plastid	84.0	84.77
TraesCS6A01G177000.2	Wheat	mitochondrion, plastid	83.45	82.7
HORVU6Hr1G037460.6	Barley	plastid	83.09	79.07
GSMUA_Achr8P26060_001	Banana	cytosol	69.82	73.7
VIT_09s0002g05990.t01	Wine grape	mitochondrion	65.27	66.73
PGSC0003DMT400073684	Potato	mitochondrion	64.0	65.31
Solyc12g042910.1.1	Tomato	mitochondrion	63.82	65.12
Bra021122.1-P	Field mustard	cytosol	38.55	64.63
KRH44412	Soybean	mitochondrion, plastid	65.27	63.77
CDY20139	Canola	cytosol, nucleus, plastid	64.0	62.75
AT3G15620.1	Thale cress	mitochondrion	63.09	62.41
CDY21853	Canola	mitochondrion, plastid	63.45	61.88
EER90163	Sorghum	plastid	24.55	23.4
EER88355	Sorghum	mitochondrion	26.36	22.17
KXG30485	Sorghum	cytosol	26.55	20.65
KXG26438	Sorghum	cytosol	26.36	20.42
EER94877	Sorghum	cytosol, plastid	14.91	18.34

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:14.9.1	Gene3D:3.40.50.620	EntrezGene:8082933	UniProt:C5XXX7
InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:DNA_photolyase_N	EnsemblPlants:EES04723	ProteinID:EES04723
ProteinID:EES04723.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003914	GO:GO:0008150	GO:GO:0009411
GO:GO:0009628	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF9	InterPro:Rossmann-like_a/b/a_fold	EnsemblPlantsGene:SORBI_3004G086300	SUPFAM:SSF48173	SUPFAM:SSF52425
UniParc:UPI0001A857CD	RefSeq:XP_002451747.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7169366..7173095

Molecular Weight (calculated)

62707.9 Da

IEP (calculated)

9.015

GRAVY (calculated)

-0.460

Length

550 amino acids

Sequence
(BLAST)

001: MEAATAATAA MVWFRKGLRV HDNPALDAAR RYGAGAASAR RLYPVFVLDP RYLRPDPAAS SPGSARAGVA RIRFLLESLS DLDARLRRLG SRLLLLRARD
101: DVADAVCAAL KDWNIGKLCF ESDTEPYALA RDKKVTDFAL ASGIEVFTPV SHTLFDPAEI IKKNGGRPPL TYQSFVSIAG EPPDPIMEEY SELPPLGDTG
201: EYELLPVPTV EELGYVDISE EEIPPFRGGE TEALRRMKES LQNKEWVAKF EKPKGDPSAF LKPSTTVLSP YLKFGCLSSR YFYHCIQDVY KSVRNHTKPP
301: VSLIGQLLWR DFFYTVSYGT PNFDRMKGNK ICKQIPWSEN EELFVAWRDG QTGYPWIDAI MIQLRKWGWM HHLARHSVAC FLTRGDMFIH WEKGRDVFER
401: LLIDSDWAIN NGNWMWLSCS SFFYQYHRIY SPITFGKKYD PNGNYIRHFI PVLKDMPREY IYEPWTAPLS IQKKANCIIG KDYPKPVVDH ETASKECKKR
501: MGEAYASSRL DANPTKGKTL NSSRRKMPHG DQDTSNSTIS KLLKRNSRAE

Best Arabidopsis Sequence Match ( AT3G15620.1 )
(BLAST)

001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG
101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS
201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI
301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI
401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQFNRI YSPISFGKKY DPDGKYIRHF LPVLKDMPKQ YIYEPWTAPL SVQTKANCIV GKDYPKPMVL
501: HDSASKECKR KMGEAYALNK KMDGKVDEEN LRDLRRKLQK DEHEESKIRN QRPKLK

Arabidopsis Description

UVR3(6-4)DNA photolyase [Source:UniProtKB/Swiss-Prot;Acc:O48652]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.