CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG26438
KXG30485
KXG31183

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	KXG31183	AT2G32950.1	11509693
AT4G08920.1	KXG31183	AT2G32950.1	11752373
AT4G08920.1	KXG26438	AT4G08920.1	15805487
AT4G08920.1	KXG30485	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003477_P001	Maize	cytosol	87.75	90.55
Os04t0452100-02	Rice	cytosol	85.77	87.0
TraesCS2D01G317500.1	Wheat	cytosol	83.1	84.77
TraesCS2A01G340000.1	Wheat	cytosol	84.93	84.69
TraesCS2B01G337900.1	Wheat	cytosol	84.79	84.55
HORVU2Hr1G079220.2	Barley	cytosol	82.68	82.44
KXG30485	Sorghum	cytosol	80.42	80.76
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	57.46	69.98
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	68.73	69.91
Solyc12g057040.1.1	Tomato	mitochondrion	57.18	69.64
KRH18908	Soybean	cytosol	66.06	68.87
Solyc04g074180.2.1	Tomato	cytosol	65.49	68.48
VIT_18s0001g05680.t01	Wine grape	cytosol	66.62	68.45
KRH62344	Soybean	cytosol	65.63	68.43
KRH16735	Soybean	cytosol	65.49	68.28
KRH53063	Soybean	cytosol	65.35	68.04
AT4G08920.1	Thale cress	cytosol	64.37	67.11
Bra037880.1-P	Field mustard	cytosol	64.08	66.91
CDX75131	Canola	cytosol	64.51	64.24
CDY54706	Canola	cytosol	64.23	63.96
EER88355	Sorghum	mitochondrion	42.54	46.18
EES04723	Sorghum	cytosol, plastid	20.42	26.36
EER90163	Sorghum	plastid	19.15	23.57
EER94877	Sorghum	cytosol, plastid	10.28	16.33

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	UniProt:A0A1B6PL98	ncoils:Coil
InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln
InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023
InterPro:IPR006050	InterPro:IPR014729	EnsemblPlants:KXG26438	ProteinID:KXG26438	ProteinID:KXG26438.1	PFAM:PF00875
PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	EnsemblPlantsGene:SORBI_3006G101600	SUPFAM:SSF48173	SUPFAM:SSF52425
TIGRFAMs:TIGR02766	UniParc:UPI00022071E1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:47202748..47206884

Molecular Weight (calculated)

80349.5 Da

IEP (calculated)

5.664

GRAVY (calculated)

-0.431

Length

710 amino acids

Sequence
(BLAST)

001: MSASSSSLCG GDPAMRSVVW FRRDLRVEDN PALAAAARAG GEVVPAYVWS PEEEGPYYPG RVSRWWISQS LKHLDASLRR LGAGKLVTRR SADAVVALLQ
101: LVRDTGATHV YFNHLYDPIS LVRDHRLKEM LAAEGIVVQS FNADLLYEPW EVVDDEGQPF TMFTAFWNRC LSMQYDPPAP LLPPKKINSG DLSMCPSEDL
201: IFEDDSERGS NALLARAWTP GWQNADKALT AFLNGPLADY SVNRKKADSA STSLLSPHLH FGELSVRKVF HLVRMKQLVW SNEGNHAAEE SCTLFLRSIG
301: LREYSRYLSF NHPSSHERPL LAHLRFFPWV VNESYFKIWR QGRTGYPLVD AGMRELWATG WLHDRIRVVV SSFFVKVLQL PWRWGMKYFW DTLLDADLES
401: DALGWQYITG SLPDSRELDR IDNPQFEGYK FDPHGEYVRR WIPELVRLPT EWIHHPWDAP VSVLQAAGIE LGSNYPLPIV ELDAAKARLQ EALSEMWQLE
501: AASRATMNNG MEEGLGDSSE VPFPEELQME VDRQRAQATA NVVMTVRRRE DQMVPTMTSS LNRAETEVSA DLGNSEDTRA QVPFHAHFHP RVEREDMIQN
601: TEGPALRING THQHNIFQQP QNHRREALAP SVSEASSSWT GREGAVVPVW SPPAASGHSE TFAADEADVS SRSYLDRHPQ SHRLMNWSQL SQSLTTGWEV
701: ENSVQPNLLG

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.