Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G079220.2 | |
| HORVU6Hr1G049950.12 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08920.1 | HORVU2Hr1G079220.2 | AT4G08920.1 | 15805487 |
| AT4G08920.1 | HORVU6Hr1G049950.12 | AT4G08920.1 | 15805487 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G340000.1 | Wheat | cytosol | 96.07 | 96.07 |
| TraesCS2D01G317500.1 | Wheat | cytosol | 93.82 | 95.98 |
| TraesCS2B01G337900.1 | Wheat | cytosol | 95.51 | 95.51 |
| Os04t0452100-02 | Rice | cytosol | 84.55 | 86.0 |
| KXG26438 | Sorghum | cytosol | 82.44 | 82.68 |
| Zm00001d003477_P001 | Maize | cytosol | 76.26 | 78.92 |
| HORVU6Hr1G049950.12 | Barley | cytosol, mitochondrion | 73.17 | 72.97 |
| GSMUA_Achr6P02100_001 | Banana | cytosol, plastid | 67.28 | 68.62 |
| KRH18908 | Soybean | cytosol | 65.45 | 68.43 |
| Solyc12g057040.1.1 | Tomato | mitochondrion | 55.62 | 67.92 |
| Solyc04g074180.2.1 | Tomato | cytosol | 64.75 | 67.89 |
| KRH16735 | Soybean | cytosol | 64.89 | 67.84 |
| PGSC0003DMT400022039 | Potato | cytosol, mitochondrion, plastid | 55.48 | 67.75 |
| KRH62344 | Soybean | cytosol | 64.33 | 67.25 |
| VIT_18s0001g05680.t01 | Wine grape | cytosol | 65.17 | 67.15 |
| KRH53063 | Soybean | cytosol | 63.9 | 66.72 |
| Bra037880.1-P | Field mustard | cytosol | 63.06 | 66.03 |
| AT4G08920.1 | Thale cress | cytosol | 62.36 | 65.2 |
| CDX75131 | Canola | cytosol | 63.34 | 63.25 |
| CDY54706 | Canola | cytosol | 63.2 | 63.11 |
| HORVU6Hr1G058740.2 | Barley | cytosol | 42.7 | 46.34 |
| HORVU6Hr1G037460.6 | Barley | plastid | 19.66 | 24.22 |
| HORVU7Hr1G109800.2 | Barley | plastid | 17.42 | 20.91 |
| HORVU7Hr1G080580.2 | Barley | plastid | 8.85 | 13.07 |
Protein Annotations
| Gene3D:1.10.579.10 | Gene3D:1.25.40.80 | MapMan:26.1.2.1.1 | Gene3D:3.40.50.620 | UniProt:A0A287IKM0 | ncoils:Coil |
| InterPro:Crypto/Photolyase_FAD-like_sf | InterPro:Crypto/Photolyase_N_sf | InterPro:Cryptochr/Photolyase_FAD-bd | InterPro:Cryptochrome/DNA_photolyase_1 | InterPro:Cryptochrome_C | InterPro:Cryptochrome_pln |
| InterPro:DNA_photolyase_1_CS_C | InterPro:DNA_photolyase_N | GO:GO:0003674 | GO:GO:0004871 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009785 | GO:GO:0009882 | GO:GO:0009987 | GO:GO:0038023 |
| EnsemblPlantsGene:HORVU2Hr1G079220 | EnsemblPlants:HORVU2Hr1G079220.2 | InterPro:IPR006050 | InterPro:IPR014729 | PFAM:PF00875 | PFAM:PF03441 |
| PFAM:PF12546 | PRINTS:PR00147 | ScanProsite:PS00394 | ScanProsite:PS00691 | PFscan:PS51645 | PANTHER:PTHR11455 |
| PANTHER:PTHR11455:SF44 | InterPro:Rossmann-like_a/b/a_fold | SUPFAM:SSF48173 | SUPFAM:SSF52425 | TIGRFAMs:TIGR02766 | UniParc:UPI000B47A0A2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:573587961..573593078
Molecular Weight (calculated)
78479.4 Da
IEP (calculated)
5.718
GRAVY (calculated)
-0.413
Length
712 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSSSSMCG GDAGMKCVVW FRRDLRVEDN PALAAAXXXX XXXXXXXXXX XXXXXXYFPG RVSRWWLSQS LKHLEASLHR LGAGKLVTRR SADSVAALLQ
101: LVRDTGATHL FFNHLYDPIS LVRDHRLKEM LTSEGIVVQS FNADLLYDPW EVNDDDGQPF NMFMPFWNRC LSMPYDPPAP LLPPKRINSG DLSMCPSDDL
201: IFEDESERGS NALLARAWSP GWQNADKALS AFLNGPLIDY SVNRKKADSA NTSLLSPYLH FGELSVRKVF HLVRMKQLVW SNEGNHAAEE SCTLFLRSVG
301: LREYSRYLCF NHPCSHEKPL LAHLRFFPWV VDESTFKFWR QGRTGYPLVD AGMRELWATG WLHDRIRVVV SSFFVKVLQL PWRWGMKYFW DTLLDADLES
401: DALGWQYISG SLPDSRELDH IDNPQLEGYK FDPHGEYVRR WLPELARLPT EWIHHPWDAP ASVLQAAGVE LGSNYPLPIV ELDTAQVRLQ EALSEMWQLE
501: AASRAAMDTG MEEGLGDSSE VPPIEFPQDL QMEVHWEPAR VAPNVLTTAQ RRQDQMVPTM TTSLNRVETE ISADLGNSVD SRAEVPFRMH FEPRTEREEI
601: IQSTGNAVGT NGIHHHNNFQ QPQHRMRNIF APSVSEASSS WTGRDGGVVP VWSPPAASGH SETYGADEAD VSSRSYLDRH PQSHRIMNWH QLSQSLTTGR
701: DVENSVQPNY IG
101: LVRDTGATHL FFNHLYDPIS LVRDHRLKEM LTSEGIVVQS FNADLLYDPW EVNDDDGQPF NMFMPFWNRC LSMPYDPPAP LLPPKRINSG DLSMCPSDDL
201: IFEDESERGS NALLARAWSP GWQNADKALS AFLNGPLIDY SVNRKKADSA NTSLLSPYLH FGELSVRKVF HLVRMKQLVW SNEGNHAAEE SCTLFLRSVG
301: LREYSRYLCF NHPCSHEKPL LAHLRFFPWV VDESTFKFWR QGRTGYPLVD AGMRELWATG WLHDRIRVVV SSFFVKVLQL PWRWGMKYFW DTLLDADLES
401: DALGWQYISG SLPDSRELDH IDNPQLEGYK FDPHGEYVRR WLPELARLPT EWIHHPWDAP ASVLQAAGVE LGSNYPLPIV ELDTAQVRLQ EALSEMWQLE
501: AASRAAMDTG MEEGLGDSSE VPPIEFPQDL QMEVHWEPAR VAPNVLTTAQ RRQDQMVPTM TTSLNRVETE ISADLGNSVD SRAEVPFRMH FEPRTEREEI
601: IQSTGNAVGT NGIHHHNNFQ QPQHRMRNIF APSVSEASSS WTGRDGGVVP VWSPPAASGH SETYGADEAD VSSRSYLDRH PQSHRIMNWH QLSQSLTTGR
701: DVENSVQPNY IG
001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK
Arabidopsis Description
CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.