Factsheet for TraesCS2A01G340000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G340000.1
TraesCS2B01G337900.1
TraesCS2D01G317500.1
TraesCS6A01G203300.1
TraesCS6A01G326100.1
TraesCS6B01G224100.2
TraesCS6B01G356400.1
TraesCS6D01G187200.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	TraesCS6A01G326100.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6B01G356400.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6D01G305800.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6A01G326100.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS6B01G356400.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS6D01G305800.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS2A01G340000.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS2B01G337900.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS2D01G317500.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS6A01G203300.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS6B01G224100.2	AT4G08920.1	15805487
AT4G08920.1	TraesCS6D01G187200.1	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G317500.1	Wheat	cytosol	97.05	99.28
TraesCS2B01G337900.1	Wheat	cytosol	98.88	98.88
HORVU2Hr1G079220.2	Barley	cytosol	96.07	96.07
Os04t0452100-02	Rice	cytosol	87.08	88.57
KXG26438	Sorghum	cytosol	84.69	84.93
Zm00001d003477_P001	Maize	cytosol	78.65	81.4
TraesCS6A01G203300.1	Wheat	cytosol	76.54	78.08
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	68.96	70.34
KRH18908	Soybean	cytosol	66.85	69.9
Solyc12g057040.1.1	Tomato	mitochondrion	57.02	69.64
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	56.88	69.47
KRH16735	Soybean	cytosol	66.43	69.46
Solyc04g074180.2.1	Tomato	cytosol	66.01	69.22
KRH62344	Soybean	cytosol	66.01	69.02
VIT_18s0001g05680.t01	Wine grape	cytosol	66.85	68.89
KRH53063	Soybean	cytosol	65.45	68.33
Bra037880.1-P	Field mustard	cytosol	64.61	67.65
AT4G08920.1	Thale cress	cytosol	63.9	66.81
CDX75131	Canola	cytosol	64.89	64.8
CDY54706	Canola	cytosol	64.75	64.66
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	43.96	47.93
TraesCS6A01G177000.2	Wheat	mitochondrion, plastid	20.08	25.77
TraesCS7A01G489800.1	Wheat	plastid	17.84	21.42
TraesCS7A01G344600.1	Wheat	plastid	9.27	14.77

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	ncoils:Coil	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C
InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050
InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394
ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173
SUPFAM:SSF52425	TIGRFAMs:TIGR02766	EnsemblPlantsGene:TraesCS2A01G340000	EnsemblPlants:TraesCS2A01G340000.1	SEG:seg	:

Description

No Description!

Coordinates

chr2A:+:574971043..574975182

Molecular Weight (calculated)

80630.9 Da

IEP (calculated)

5.724

GRAVY (calculated)

-0.428

Length

712 amino acids

Sequence
(BLAST)

001: MSVSSSSMCG GDAGMKCVVW FRRDLRVEDN PALAAAARTA GEVVPAYVWS PEEDGPYFPG RVSRWWLSQS LKHLEASLHR LGAAKLVTRR SPDSVAALLQ
101: LVRDTGATHL FFNHLYDPIS LVRDHRLKEM LTAEGIVVQS FNADLLYDPW EVNDDKGQPF NMFMPFWNRC LSMPYDPPAP LLPPKRINSG DLSMCPSDDL
201: IFEDESERGS NALLARAWSP GWQNADKALS AFLNGPLIDY SVNRKKADSA NTSLLSPYLH FGELSVRKVF HLVRMKQLVW SNEGNHAAEE SCTLFLRSVG
301: LREYSRYLCF NHPCSHEKPL LAHLRFFPWV VDESTFKFWR QGRTGYPLVD AGMRELWATG WLHDRIRVVV SSFFVKVLQL PWRWGMKYFW DTLLDADLES
401: DALGWQYISG SLPDSRELDH IDNPQLEGYK FDPHGEYVRR WLPELARLPT EWIHHPWDAP ASVLQAAGVE LGSNYPLPIV ELDTAQVRLQ EALSEMWQLE
501: AASRAAMDTG MEEGLGDSSE VPPIEFPQDL QMEVHWEPAR VAPNVLTTAQ RRQDQMVPTM TTSLNRVETE ISADLGNSVD SRAEVPFRMH FEPRTEREEM
601: IRSTGNAAGT NGIHHHNNFQ QPQHRMRNIF APSVSEASSS WTGRDGGVVP VWSPPAASGH SETYGADEAD VSSRSYLDRH PQSHRIMNWH QLSQSLTTGR
701: DVENSVQPNF IG

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.