CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14801
KRH16735
KRH18908
KRH53063
KRH62344
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	KRH14801	AT2G32950.1	11509693
AT4G08920.1	KRH73341	AT2G32950.1	11509693
AT4G08920.1	KRH14801	AT2G32950.1	11752373
AT4G08920.1	KRH73341	AT2G32950.1	11752373
AT4G08920.1	KRH16735	AT4G08920.1	15805487
AT4G08920.1	KRH18908	AT4G08920.1	15805487
AT4G08920.1	KRH53063	AT4G08920.1	15805487
AT4G08920.1	KRH62344	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16735	Soybean	cytosol	97.65	97.65
KRH53063	Soybean	cytosol	86.93	86.8
KRH62344	Soybean	cytosol	86.49	86.49
VIT_18s0001g05680.t01	Wine grape	cytosol	84.73	83.5
Solyc04g074180.2.1	Tomato	cytosol	82.23	82.47
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	67.4	78.73
AT4G08920.1	Thale cress	cytosol	78.56	78.56
Solyc12g057040.1.1	Tomato	mitochondrion	67.25	78.56
Bra037880.1-P	Field mustard	cytosol	78.27	78.38
CDX75131	Canola	cytosol	78.56	75.04
CDY54706	Canola	cytosol	78.27	74.75
Zm00001d028434_P001	Maize	cytosol	19.53	72.68
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	74.16	72.35
Zm00001d015419_P001	Maize	cytosol	17.47	72.12
Zm00001d005288_P001	Maize	cytosol	18.21	72.09
Zm00001d015045_P001	Maize	cytosol	19.24	70.05
Os04t0452100-02	Rice	cytosol	70.63	68.71
TraesCS2D01G317500.1	Wheat	cytosol	69.75	68.25
TraesCS6D01G187200.1	Wheat	cytosol	69.02	67.34
TraesCS6A01G203300.1	Wheat	cytosol	68.72	67.05
Zm00001d003477_P001	Maize	cytosol	67.55	66.86
TraesCS2A01G340000.1	Wheat	cytosol	69.9	66.85
TraesCS2B01G337900.1	Wheat	cytosol	69.75	66.71
KXG30485	Sorghum	cytosol	69.16	66.62
KXG26438	Sorghum	cytosol	68.87	66.06
Zm00001d016915_P002	Maize	cytosol, plastid	68.58	66.05
Os02t0573200-01	Rice	cytosol	69.6	66.02
HORVU2Hr1G079220.2	Barley	cytosol	68.43	65.45
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	68.58	65.41
TraesCS6B01G224100.2	Wheat	cytosol	65.49	65.2
Zm00001d050850_P001	Maize	cytosol	66.81	64.36
KRH13218	Soybean	extracellular	6.9	55.95
KRG92422	Soybean	cytosol	51.54	55.36
KRH69122	Soybean	cytosol	48.75	55.33
KRH34384	Soybean	cytosol	50.66	53.74
KRH44412	Soybean	mitochondrion, plastid	20.7	25.04
KRH61917	Soybean	plastid	17.77	20.72
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	9.69	15.0
KRH69286	Soybean	plastid	9.84	14.41

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	EMBL:ACUP02008147	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C
InterPro:DNA_photolyase_N	EnsemblPlantsGene:GLYMA_13G089200	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023
UniProt:I1LVY6	InterPro:IPR006050	InterPro:IPR014729	EnsemblPlants:KRH18908	ProteinID:KRH18908	ProteinID:KRH18908.1
ProteinID:KRH18909.1	PFAM:PF00875	PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394
ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173
SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI000233BF08	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:20370993..20376851

Molecular Weight (calculated)

76890.2 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.465

Length

681 amino acids

Sequence
(BLAST)

001: MSGGGCSIVW FRRDLRVEDN PALAAGVRAG AVISVFIWAP EEEGQYYPGR VSRWWLKQSL AHLDSSLRNL GSPLITKRST NSISSLLEVV KSTGATQLFF
101: NHLYDPLSLV RDHRAKEVLT AQGITVRSFN SDLLYEPWDV NDAHGQPFTT FSAFWERCLS MPYDPQAPLL PPKRIIPGDV SRCPSDTLVF EDELEKASNA
201: LLARAWSPGW SNADKALTAF VNGALIEYSK NRRKADSATT SFLSPHLHFG EVSVKKVFHL VRIKQVFWAN EGNKAGEESV NLFLKSIGLR EYSRYISFNH
301: PYSHERPLLA HLKFFPWVVN EGYFKAWRQG RTGYPLVDAG MRELWATGWL HDRIRVVVSS FFVKVLQLPW RWGMKYFWDT LLDADLESDA LGWQYISGTL
401: PDGRELDRID NPQFEGYKCD PNGEYVRRWL PELARLPTEW IHHPWNAPES VLQAAGIELG SNYPLPIVGI DAAEVRLQEA LIQMWQQEAA SRAAMENGTE
501: EGLGDSAESA PIAFPQDIQM EERPEPVRNN LPHGTRRYQD QMVPSITSSH VRVEEEETSS DLRNSAADSR AEVPINVTTQ QIARETVNQG VLLNANRNTR
601: VQNNATTWLR NAAEDSTAES SSSTRRERDG GVVPVWSPPA SNFSEQFVDD ENGIGAGSSY LQRQHPQSHQ LMNWTRLPQT G

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.