Factsheet for Zm00001d016915_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 14966246

msms PMID: 14966246 doi

PM Lonosky, X Zhang, VG Honavar, DL Dobbs, A Fu, SR Rodermel

Department of Genetics, Iowa State University, Ames, Iowa 50011, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003477_P001
Zm00001d005288_P001
Zm00001d015045_P001
Zm00001d015419_P001
Zm00001d016915_P002
Zm00001d018207_P001
Zm00001d028434_P001
Zm00001d050850_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	Zm00001d018207_P001	AT2G32950.1	11509693
AT4G08920.1	Zm00001d052138_P004	AT2G32950.1	11509693
AT4G08920.1	Zm00001d018207_P001	AT2G32950.1	11752373
AT4G08920.1	Zm00001d052138_P004	AT2G32950.1	11752373
AT4G08920.1	Zm00001d003477_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d005288_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d015045_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d015419_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d016915_P002	AT4G08920.1	15805487
AT4G08920.1	Zm00001d028434_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d050850_P001	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30485	Sorghum	cytosol	95.76	95.76
Zm00001d015419_P001	Maize	cytosol	22.07	94.55
Zm00001d015045_P001	Maize	cytosol	24.89	94.12
Zm00001d005288_P001	Maize	cytosol	22.63	93.02
Zm00001d028434_P001	Maize	cytosol	24.05	92.9
Zm00001d050850_P001	Maize	cytosol	91.94	91.94
Os02t0573200-01	Rice	cytosol	86.7	85.38
TraesCS6D01G187200.1	Wheat	cytosol	82.74	83.81
TraesCS6A01G203300.1	Wheat	cytosol	82.6	83.67
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	82.04	81.23
TraesCS6B01G224100.2	Wheat	cytosol	77.37	79.97
Zm00001d003477_P001	Maize	cytosol	76.38	78.49
Solyc12g057040.1.1	Tomato	mitochondrion	58.27	70.67
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	58.13	70.5
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	69.02	69.91
Solyc04g074180.2.1	Tomato	cytosol	66.34	69.07
VIT_18s0001g05680.t01	Wine grape	cytosol	67.19	68.74
KRH18908	Soybean	cytosol	66.05	68.58
KRH62344	Soybean	cytosol	65.91	68.43
KRH16735	Soybean	cytosol	65.77	68.28
KRH53063	Soybean	cytosol	65.77	68.18
Bra037880.1-P	Field mustard	cytosol	64.64	67.21
AT4G08920.1	Thale cress	cytosol	64.36	66.81
CDX75131	Canola	cytosol	64.92	64.38
CDY54706	Canola	cytosol	64.78	64.24
Zm00001d045944_P007	Maize	cytosol	43.28	46.79
Zm00001d015724_P001	Maize	plastid	12.45	24.18
Zm00001d046935_P001	Maize	plastid	18.25	23.89
Zm00001d047501_P001	Maize	plastid	10.61	16.82
Zm00001d029105_P001	Maize	plastid	10.33	16.37

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	EntrezGene:100384475	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	UniProt:A0A1D6HB67
ProteinID:AQK71949.1	ncoils:Coil	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1
InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882
GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441
PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455
PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI0002220C34
EnsemblPlantsGene:Zm00001d016915	EnsemblPlants:Zm00001d016915_P002	EnsemblPlants:Zm00001d016915_T002	SEG:seg	:	:

Description

Cryptochrome-1

Coordinates

chr5:+:179755601..179759432

Molecular Weight (calculated)

79884.5 Da

IEP (calculated)

5.327

GRAVY (calculated)

-0.491

Length

707 amino acids

Sequence
(BLAST)

001: MSASQSSMSG AGEPGARAVV WFRRDLRVED NPALAAAARA AGEVVPAYVW APEEDGAYYP GRVSRWWLSQ SLKHLDASLR RLGAARLVTR RSNDAVAALL
101: DLVRCTGATH LFFNHLYDPL SLVRDYRVKE QLAAEGIDVQ SFNADLLYEP WEVLDEDRRP FTMFAPFWNR CLCMPDPAAP LLPPKRINSG DLSRCPWDEL
201: VFEDESERGS NALLARAWSP GWQNADKALT AFLNGPLMDY SVNRKKADSA STSLLSPYLH FGELSVRKVF HQVRMKQLMW SNDGNHAGEE SCTLFLRSIG
301: LREYSRYLTF NHPCSHEKPL LSHLRFFPWV VNEVYFKVWR QGRTGYPLVD AGMRELWATG WVHDRIRVVV SSFFVKVLQL PWRWGMKYFW DTLLDADLES
401: DALGWQYISG SLPDGRELDR IDNPQFEGYK FDPHGEYVRR WLPELARLPT EWIHHPWDAP ESVLQAAGVE LGSNYPRPIV ELDAANSRLQ DALSEMWELE
501: AASRAAMENG MEEGLGDSTD EPPIDFPQEL RMEVDRQPVQ PAIHAPGVTG RRREDQMVPS MTSSFIRAET ELTADFGHTS EDSRPEVPSN IHHLQARPER
601: EETVDGGTGN AVRVHGNHHQ QNLQNNMHRV LGIAPSISEA SSSWTGRDGG VVPVWSPPAA SGHSDSYAAD EADISSRGYL DRHPQSHTMM NWSQLSQSLT
701: TGWEVDN

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.