Factsheet for Zm00001d047501_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94877	Sorghum	cytosol, plastid	96.19	95.97
Zm00001d029105_P001	Maize	plastid	95.07	95.07
TraesCS7A01G344600.1	Wheat	plastid	85.2	85.01
TraesCS7D01G334900.2	Wheat	plastid	83.86	83.86
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	85.87	83.44
TraesCS7B01G238500.1	Wheat	cytosol, plastid	77.8	77.28
HORVU7Hr1G080580.2	Barley	plastid	80.04	74.07
GSMUA_AchrUn_...	Banana	cytosol	19.96	62.68
GSMUA_Achr5P21430_001	Banana	cytosol	56.28	55.04
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	53.59	54.32
GSMUA_AchrUn_...	Banana	plastid	37.67	51.69
Solyc09g075180.2.1	Tomato	cytosol	51.35	50.66
PGSC0003DMT400081378	Potato	cytosol	51.12	50.33
VIT_07s0005g00590.t01	Wine grape	cytosol	50.22	49.34
KRH69286	Soybean	plastid	50.9	48.82
AT2G47590.1	Thale cress	cytosol	47.76	47.65
CDY71211	Canola	cytosol	47.31	46.78
CDY71236	Canola	cytosol	47.53	46.59
Bra004444.1-P	Field mustard	cytosol	47.31	46.37
CDX80119	Canola	endoplasmic reticulum	39.01	31.81
Zm00001d046935_P001	Maize	plastid	25.56	21.11
Zm00001d015724_P001	Maize	plastid	16.37	20.05
Zm00001d005288_P001	Maize	cytosol	6.05	15.7
Zm00001d015045_P001	Maize	cytosol	6.28	14.97
Zm00001d028434_P001	Maize	cytosol	6.05	14.75
Zm00001d015419_P001	Maize	cytosol	5.38	14.55
Zm00001d050850_P001	Maize	cytosol	17.26	10.89
Zm00001d016915_P002	Maize	cytosol, plastid	16.82	10.61
Zm00001d003477_P001	Maize	cytosol	15.7	10.17
Zm00001d045944_P007	Maize	cytosol	14.57	9.94

Protein Annotations

EnsemblPlants:Zm00001d047501_P001	EnsemblPlants:Zm00001d047501_T001	EnsemblPlantsGene:Zm00001d047501	Gene3D:1.25.40.80	Gene3D:3.40.50.620	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:DNA_photolyase_N	InterPro:IPR006050	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	PANTHER:PTHR11455
PANTHER:PTHR11455:SF2	PFAM:PF00875	PFscan:PS51645	ProteinID:AQL06786.1	SUPFAM:SSF48173	SUPFAM:SSF52425
UniParc:UPI0004DEB507	UniProt:A0A1D6PAR6	MapMan:35.1	:	:	:

Description

succinate dehydrogenase5Blue-light photoreceptor PHR2

Coordinates

chr9:-:132763532..132766871

Molecular Weight (calculated)

48380.4 Da

IEP (calculated)

8.563

GRAVY (calculated)

-0.283

Length

446 amino acids

Sequence
(BLAST)

001: MATASDSDAG AQPRDDPSLL PFASFSFALS IRAPATPTLA SVPSTIHLPT QISTLAVCLH PSAAQPLPRR PTRLNSATYS VISPLPSSTP GLSRSFPSGA
101: PAASGRRRTL VWFRADLRLH DHEPFHAAAG ASSSLLPVFV FDPRDFGKSP SGFDRTGPYR ANFLLDSVAD LRRSLRARGG DLVVRVGRPE VVIPELARAA
201: GAEAVYAHGE VSRDEVRTEE RVQKAVEKEG INVKYFWGST LYHVEDLPFR LDDMPSNYGG FREAVKRLDV RKVLEAPEEV KCVPMKNVLE PGDIPTLAEL
301: GLTAPPAMAQ DSKPAVGSTL IGGETGALER LKKFAAECSM QPNKADKSNT QDSIYGANFS CKISPWLATG CLSPRFMYEE LKKHATRAIS SESTPKNNDG
401: TSDAGTNWLM FELLWRDFFR FITKKYSSVQ KTSEVATGCT PAPALA

Best Arabidopsis Sequence Match ( AT2G47590.1 )
(BLAST)

001: MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV
101: PRRPVDPSSA AALRRAAVVW FRNDLRVHDN ECLNSANDEC VSVLPVYCFD PRDYGKSSSG FDKTGPFRAQ FLIESVSELR KNLQARGSNL VVRVGKPEAV
201: LVELAKEIGA DAVYAHREVS HDEVKAEGKI ETAMKEEGVE VKYFWGSTLY HLDDLPFKIE DLPSNYGAFK DKVQKLEIRK TIAALDQLKS LPSRGDVELG
301: DIPSLLDLGI SPTPRTSQEG KPTMVGGETE ALTRLKSFAA DCQARLSKGN QKGGNNSVFG ANFSCKISPW LAMGSISPRS MFDELKKTIS ASTTSTTPRN
401: GPGDTGLNWL MYELLWRDFF RFITKKYSSA KTQVEAGPAT ACTGAFA

Arabidopsis Description

PHR2At2g47590 [Source:UniProtKB/TrEMBL;Acc:Q058P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.