Factsheet for VIT_07s0005g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081378	Potato	cytosol	76.21	76.38
Solyc09g075180.2.1	Tomato	cytosol	75.99	76.33
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	66.74	68.86
AT2G47590.1	Thale cress	cytosol	67.62	68.68
CDY71211	Canola	cytosol	66.52	66.96
CDY71236	Canola	cytosol	66.3	66.15
Bra004444.1-P	Field mustard	cytosol	65.86	65.71
GSMUA_AchrUn_...	Banana	cytosol	20.26	64.79
KRH69286	Soybean	plastid	64.76	63.23
GSMUA_Achr5P21430_001	Banana	cytosol	58.37	58.11
TraesCS7D01G334900.2	Wheat	plastid	51.98	52.91
TraesCS7A01G344600.1	Wheat	plastid	51.76	52.57
GSMUA_AchrUn_...	Banana	plastid	37.22	52.0
Zm00001d029105_P001	Maize	plastid	49.78	50.67
EER94877	Sorghum	cytosol, plastid	49.78	50.56
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	51.1	50.54
Zm00001d047501_P001	Maize	plastid	49.34	50.22
TraesCS7B01G238500.1	Wheat	cytosol, plastid	48.68	49.22
HORVU7Hr1G080580.2	Barley	plastid	50.44	47.51
CDX80119	Canola	endoplasmic reticulum	52.42	43.51
VIT_04s0008g02670.t01	Wine grape	plastid	31.28	24.23
VIT_09s0002g05990.t01	Wine grape	mitochondrion	17.4	14.68
VIT_05s0049g00960.t01	Wine grape	cytosol	16.74	11.76
VIT_18s0001g05680.t01	Wine grape	cytosol	14.1	9.26

Protein Annotations

Gene3D:1.25.40.80	EntrezGene:100253809	wikigene:100253809	Gene3D:3.40.50.620	MapMan:35.1	EMBL:AM462494
ProteinID:CAN68022	ProteinID:CAN68022.1	ProteinID:CCB59971	ProteinID:CCB59971.1	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:DNA_photolyase_N	UniProt:F6HZ56	EMBL:FN596502	InterPro:IPR006050	InterPro:IPR014729	EntrezGene:LOC100253809
wikigene:LOC100253809	PFAM:PF00875	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF2	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF48173	SUPFAM:SSF52425	TIGR:TC53516	UniParc:UPI00015CAD28	ArrayExpress:VIT_07s0005g00590	EnsemblPlantsGene:VIT_07s0005g00590
EnsemblPlants:VIT_07s0005g00590.t01	unigene:Vvi.12060	RefSeq:XP_002270248	RefSeq:XP_002270248.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:3259828..3262674

Molecular Weight (calculated)

49304.6 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.310

Length

454 amino acids

Sequence
(BLAST)

001: MDPNLQTLEN PETQSSDEQT QLAIIAPPTA SISLSLSAVL PTHFLLPPKI SSLLAHHPSK VRIPSQAASL AHLSLSSSLN QPKSFFKSTP ISSSPLQSPL
101: FLGPRRSSDP SNAAGIRRSC IVWFRNDLRV HDNECLNSAS NESMSMLPVY CFDPRDYGKS SSGFDKTGPY RASFLIESVS DLRQNLQKRG SDLVVRIGKP
201: ETVLVELAKA VGADAIYAHR EVSHDEVKGE EKIEAAMKEE GVELKYFWGS TLYHVDDLPF KMEQMPTNYG GFKEKVKGLE IRKTIATLDQ LRGLPARGDV
301: EAGEIPSLLD LGLSPSATLP QNGMSTANGS LVGGETEALQ RLKKFAAECQ AQPPKGAAND SIYGANFSCK ISPWLAMGCL SPRSMFDEIK KSASRTISAS
401: TSKDGGSGQS DTGMNWLMFE LMWRDFFRFI TKKYSSATKQ VDAAPATACT GALA

Best Arabidopsis Sequence Match ( AT2G47590.1 )
(BLAST)

001: MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV
101: PRRPVDPSSA AALRRAAVVW FRNDLRVHDN ECLNSANDEC VSVLPVYCFD PRDYGKSSSG FDKTGPFRAQ FLIESVSELR KNLQARGSNL VVRVGKPEAV
201: LVELAKEIGA DAVYAHREVS HDEVKAEGKI ETAMKEEGVE VKYFWGSTLY HLDDLPFKIE DLPSNYGAFK DKVQKLEIRK TIAALDQLKS LPSRGDVELG
301: DIPSLLDLGI SPTPRTSQEG KPTMVGGETE ALTRLKSFAA DCQARLSKGN QKGGNNSVFG ANFSCKISPW LAMGSISPRS MFDELKKTIS ASTTSTTPRN
401: GPGDTGLNWL MYELLWRDFF RFITKKYSSA KTQVEAGPAT ACTGAFA

Arabidopsis Description

PHR2At2g47590 [Source:UniProtKB/TrEMBL;Acc:Q058P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.