Factsheet for PGSC0003DMT400081378

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075180.2.1	Tomato	cytosol	96.25	96.46
VIT_07s0005g00590.t01	Wine grape	cytosol	76.38	76.21
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	69.76	71.82
AT2G47590.1	Thale cress	cytosol	66.23	67.11
CDY71211	Canola	cytosol	64.02	64.3
CDY71236	Canola	cytosol	64.46	64.18
KRH69286	Soybean	plastid	65.78	64.09
Bra004444.1-P	Field mustard	cytosol	63.8	63.52
GSMUA_AchrUn_...	Banana	cytosol	19.87	63.38
GSMUA_Achr5P21430_001	Banana	cytosol	55.85	55.48
TraesCS7A01G344600.1	Wheat	plastid	51.88	52.57
TraesCS7D01G334900.2	Wheat	plastid	51.66	52.47
EER94877	Sorghum	cytosol, plastid	50.99	51.68
Zm00001d029105_P001	Maize	plastid	50.55	51.35
Zm00001d047501_P001	Maize	plastid	50.33	51.12
GSMUA_AchrUn_...	Banana	plastid	36.64	51.08
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	51.43	50.76
TraesCS7B01G238500.1	Wheat	cytosol, plastid	49.01	49.44
HORVU7Hr1G080580.2	Barley	plastid	50.55	47.51
CDX80119	Canola	endoplasmic reticulum	50.55	41.86
PGSC0003DMT400076096	Potato	cytosol, plastid	27.37	22.75
PGSC0003DMT400073684	Potato	mitochondrion	18.1	15.21
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	15.01	11.66
PGSC0003DMT400044219	Potato	cytosol	15.67	10.97

Protein Annotations

Gene3D:1.25.40.80	EntrezGene:102601320	Gene3D:3.40.50.620	MapMan:35.1	ProteinID:ABD93511	ProteinID:ABD93511.2
InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:DNA_photolyase_N	EMBL:DQ423046	GO:GO:0003674	GO:GO:0003824
GO:GO:0016829	InterPro:IPR006050	InterPro:IPR014729	UniProt:M1D4N3	PFAM:PF00875	EnsemblPlantsGene:PGSC0003DMG400031812
PGSC:PGSC0003DMG400031812	EnsemblPlants:PGSC0003DMT400081378	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF2	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF48173	SUPFAM:SSF52425	UniParc:UPI0002960FEA	RefSeq:XP_006359849.1	SEG:seg	:

Description

DNA photolyase [Source:PGSC_GENE;Acc:PGSC0003DMG400031812]

Coordinates

chr9:-:52750562..52753964

Molecular Weight (calculated)

49506.7 Da

IEP (calculated)

8.116

GRAVY (calculated)

-0.418

Length

453 amino acids

Sequence
(BLAST)

001: MDPRNQFSDN PETQKPQEEE QQHLPILPIA SISLALSTIL PTHFLNPPKI STLFNKPNKV KIPTQVSSLS NLSLSASSLP PTKSNFKSTI SANPLQNTLT
101: LNPLRPSEPS NAAGLRRASI VWFRNDLRVH DNECLNAAHN ESMSVLAVYC FDPRDYGKSS SGFDKTGPYR ASFLIESVAD LRKNLQARGS DLVVRIGKPE
201: TVLVELAKAV GAEAVYAHRE VSHDEVKGED KIDAVMKDEG LEVKYFWGST LYHVDDLPFK LEQMPTNYGG FREKVQGLEV RKTIEALDQL RGLPARGDVE
301: PGEIPSLVDL GLNPSGTMGQ NGKPAANASL VGGENEALQR LRKFAAECQA QPSKENKDGT TDSIYGANFS CKISPWLAMG CLSPRSMFDE LKKSTSRTIS
401: AASGKKDGGS GTGLNWLMYE LLWRDFFRFI TKKYSAAKQN SATPVTACVG AAA

Best Arabidopsis Sequence Match ( AT2G47590.1 )
(BLAST)

001: MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV
101: PRRPVDPSSA AALRRAAVVW FRNDLRVHDN ECLNSANDEC VSVLPVYCFD PRDYGKSSSG FDKTGPFRAQ FLIESVSELR KNLQARGSNL VVRVGKPEAV
201: LVELAKEIGA DAVYAHREVS HDEVKAEGKI ETAMKEEGVE VKYFWGSTLY HLDDLPFKIE DLPSNYGAFK DKVQKLEIRK TIAALDQLKS LPSRGDVELG
301: DIPSLLDLGI SPTPRTSQEG KPTMVGGETE ALTRLKSFAA DCQARLSKGN QKGGNNSVFG ANFSCKISPW LAMGSISPRS MFDELKKTIS ASTTSTTPRN
401: GPGDTGLNWL MYELLWRDFF RFITKKYSSA KTQVEAGPAT ACTGAFA

Arabidopsis Description

PHR2At2g47590 [Source:UniProtKB/TrEMBL;Acc:Q058P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.