Factsheet for PGSC0003DMT400044219

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001888
PGSC0003DMT400036075
PGSC0003DMT400039600
PGSC0003DMT400044219
PGSC0003DMT400061712
PGSC0003DMT400069974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	PGSC0003DMT400044219	AT1G04400.1	15805487
AT1G04400.1	PGSC0003DMT400039600	AT1G53090.1	22739826
AT1G04400.1	PGSC0003DMT400061712	AT2G18790.1	11089975
AT1G04400.1	PGSC0003DMT400069974	AT2G18790.1	11089975
AT1G04400.1	PGSC0003DMT400036075	AT2G32950.1	11509693
AT1G04400.1	PGSC0003DMT400036075	AT2G32950.1	22739826
AT1G04400.1	PGSC0003DMT400001888	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090100.2.1	Tomato	cytosol	94.59	96.38
CDX89827	Canola	cytosol, mitochondrion	47.6	70.97
VIT_05s0049g00960.t01	Wine grape	cytosol	68.32	68.42
KRH69122	Soybean	cytosol	62.91	67.83
KRG92422	Soybean	cytosol	66.46	67.82
CDY18229	Canola	cytosol, mitochondrion	59.51	66.84
Bra015313.1-P	Field mustard	cytosol	59.51	66.72
KRH34384	Soybean	cytosol	66.0	66.51
AT1G04400.1	Thale cress	cytosol	60.59	64.05
CDX86636	Canola	cytosol	61.21	63.97
Bra030568.1-P	Field mustard	cytosol	60.9	63.65
CDY15503	Canola	cytosol	60.43	62.96
KRH13218	Soybean	extracellular	7.73	59.52
GSMUA_Achr5P18570_001	Banana	cytosol	60.59	58.59
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	58.73	57.93
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	56.72	56.2
Os02t0625000-01	Rice	cytosol	56.41	56.07
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	56.41	55.9
TraesCS6B01G257600.2	Wheat	cytosol	55.8	55.54
HORVU6Hr1G058740.2	Barley	cytosol	55.8	55.03
Zm00001d045944_P007	Maize	cytosol	54.56	53.98
EER88355	Sorghum	mitochondrion	54.56	53.98
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	46.68	51.8
PGSC0003DMT400076096	Potato	cytosol, plastid	20.71	24.59
PGSC0003DMT400073684	Potato	mitochondrion	20.4	24.49
PGSC0003DMT400081378	Potato	cytosol	10.97	15.67

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	EntrezGene:102588921	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N
GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628
GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729
UniProt:M1BFT9	PFAM:PF00875	PFAM:PF03441	EnsemblPlantsGene:PGSC0003DMG400017172	PGSC:PGSC0003DMG400017172	EnsemblPlants:PGSC0003DMT400044219
PRINTS:PR00147	ScanProsite:PS00394	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI000296B96B	RefSeq:XP_006354487.1	:

Description

Cryptochrome 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400017172]

Coordinates

chr9:-:56397443..56401966

Molecular Weight (calculated)

73412.7 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.472

Length

647 amino acids

Sequence
(BLAST)

001: MESNSKTIVW FRRDLRIEDN PALAAAARNG SVLPVFIWCP KEEGQFYPGR VSRWWLKQSL IHLKQSLKSL GAELVLIKTQ STLSALTECV DAVGATKVVY
101: NHLYDPVSLV RDHNIKQKLG ELGISIQSYN GDLLNEPWEV YDDDGKVFTT FDAYWEKSLS IQNESGSHLP PWRLTQAAGS VKMCSIEELG LENESEKSSN
201: ALLGKGWAPG WSNADKALTE FVESNLLAYS KDRLRVGGNS TSLLSPYLHF GEVSVRKVFN SVRLKQILWT KEGISVGKDS ATIYLRAIGL REYSRYICFN
301: FPFTHERSLL NNLRFFPWNA DQAHFKAWRQ GRTGYPLVDA GMRELWATGW VHNKIRVIVS SFFVKFLLLP WQWGMKYFWD TLLDADLESD IIGWQYISGS
401: LPDGHELERL DNPEVQGFNY DPDGEYVRHW LPELARMPAE WIHHPWDAPP NVLKAAGVEL GMNYPNPIID VDVARDRLMQ AIVIMREKEA AVNASDASGT
501: IEVVFDNSEN VGDSANIPKD DVVKGKGPCP SSSSYDQRVP SMQNVCTYKK RPKPEEDTKK LNDNRLSYKN ERIKMSNVDG DLCSTAESSS MKKQMTVSRN
601: SFSVPRTITM SHDRKSFDDE ASSHVKLQKE EEIDTEINSC KNEATTR

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.