Factsheet for AT1G04400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030568.1-P	Field mustard	cytosol	92.48	91.44
CDY15503	Canola	cytosol	92.16	90.82
CDX86636	Canola	cytosol	91.83	90.79
CDY18229	Canola	cytosol, mitochondrion	83.82	89.06
CDX89827	Canola	cytosol, mitochondrion	62.58	88.25
Bra015313.1-P	Field mustard	cytosol	82.84	87.87
KRG92422	Soybean	cytosol	66.67	64.35
KRH69122	Soybean	cytosol	62.42	63.67
KRH34384	Soybean	cytosol	66.18	63.08
VIT_05s0049g00960.t01	Wine grape	cytosol	65.36	61.92
Solyc09g090100.2.1	Tomato	cytosol	63.4	61.1
PGSC0003DMT400044219	Potato	cytosol	64.05	60.59
KRH13218	Soybean	extracellular	8.17	59.52
GSMUA_Achr5P18570_001	Banana	cytosol	60.78	55.61
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	58.01	54.12
Os02t0625000-01	Rice	cytosol	56.05	52.69
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	56.21	52.68
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	56.05	52.53
HORVU6Hr1G058740.2	Barley	cytosol	56.21	52.44
TraesCS6B01G257600.2	Wheat	cytosol	55.56	52.31
EER88355	Sorghum	mitochondrion	54.74	51.22
Zm00001d045944_P007	Maize	cytosol	54.09	50.61
AT4G08920.1	Thale cress	cytosol	50.65	45.52
AT3G15620.1	Thale cress	mitochondrion	24.02	26.44
AT5G24850.1	Thale cress	plastid	20.1	21.62
AT2G47590.1	Thale cress	cytosol	11.76	16.11

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	EntrezGene:839529	ProteinID:AAB70435.1
ProteinID:AAL16378.1	ProteinID:AAL16379.1	ProteinID:AAT80593.1	ProteinID:AAT80594.1	ProteinID:AAT80595.1	ProteinID:AAT80596.1
ProteinID:AAT80597.1	ProteinID:AAT80598.1	ProteinID:AAT80599.1	ProteinID:AAT80600.1	ProteinID:AAT80601.1	ProteinID:AAT80602.1
ProteinID:AAT80603.1	ProteinID:AAT80604.1	ProteinID:AAT80605.1	ProteinID:AAT80606.1	ProteinID:AAT80607.1	ProteinID:AAT80608.1
ProteinID:AAT80609.1	ProteinID:AAT80610.1	ProteinID:AAT80611.1	ProteinID:AAT80612.1	ProteinID:AAT80613.1	ProteinID:AAT80614.1
ProteinID:AAT80615.1	ProteinID:AAT80616.1	ProteinID:AAT80617.1	ProteinID:AAT80618.1	ProteinID:AAT80619.1	ProteinID:AAT80620.1
ProteinID:AAT80621.1	ProteinID:AAT80622.1	ProteinID:AAT80623.1	ProteinID:ABY77601.1	ProteinID:ABY77602.1	ProteinID:ABY77603.1
ProteinID:ABY77604.1	ProteinID:ABY77605.1	ProteinID:ABY77606.1	ProteinID:ABY77607.1	ProteinID:ABY77608.1	ProteinID:ABY77609.1
ProteinID:ABY77610.1	ProteinID:ABY77611.1	ProteinID:ABY77612.1	ProteinID:ABY77613.1	ProteinID:ABY77614.1	ProteinID:ABY77615.1
ProteinID:ABY77616.1	ProteinID:ABY77617.1	ProteinID:ABY77618.1	ProteinID:ABY77619.1	ProteinID:ABY77620.1	ProteinID:ABY77621.1
ProteinID:ABY77622.1	ProteinID:ABY77623.1	ProteinID:ABY77624.1	ProteinID:ABY77625.1	ProteinID:ABY77626.1	ProteinID:ABY77627.1
ProteinID:ABY77628.1	ProteinID:ABY77629.1	ProteinID:ABY77630.1	ProteinID:ABY77631.1	ProteinID:ABY77632.1	ProteinID:AEE27692.1
ProteinID:AEE27693.1	ProteinID:AEM06547.1	ProteinID:AEM06565.1	ProteinID:AEM06579.1	ProteinID:AEM06598.1	ProteinID:AEM06603.1
ProteinID:AEM06620.1	ProteinID:AEM06627.1	ProteinID:AEM06634.1	ProteinID:AEM06662.1	ProteinID:AEM06667.1	ProteinID:AEM06672.1
ProteinID:AEM06685.1	ProteinID:AEM06718.1	EMBL:AK220946	ArrayExpress:AT1G04400	EnsemblPlantsGene:AT1G04400	RefSeq:AT1G04400
TAIR:AT1G04400	RefSeq:AT1G04400-TAIR-G	EnsemblPlants:AT1G04400.1	TAIR:AT1G04400.1	EMBL:AY057440	Unigene:At.21976
EMBL:BT008576	EMBL:BT008648	ProteinID:CAA67508.1	Symbol:CRY2	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	UniProt:G4WTR2
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006325	GO:GO:0006338	GO:GO:0006464
GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009414	GO:GO:0009416	GO:GO:0009605	GO:GO:0009606
GO:GO:0009607	GO:GO:0009628	GO:GO:0009637	GO:GO:0009638	GO:GO:0009646	GO:GO:0009653
GO:GO:0009719	GO:GO:0009785	GO:GO:0009791	GO:GO:0009881	GO:GO:0009882	GO:GO:0009908
GO:GO:0009909	GO:GO:0009911	GO:GO:0009987	GO:GO:0010075	GO:GO:0010118	GO:GO:0010244
GO:GO:0010617	GO:GO:0016043	GO:GO:0016569	GO:GO:0016604	GO:GO:0016605	GO:GO:0018298
GO:GO:0019538	GO:GO:0019725	GO:GO:0038023	GO:GO:0040007	GO:GO:0042752	GO:GO:0042802
GO:GO:0046872	GO:GO:0048574	GO:GO:0050896	GO:GO:0051607	GO:GO:0071949	GO:GO:0072387
GO:GO:1901371	GO:GO:1902347	GO:GO:2000028	GO:GO:2000379	InterPro:IPR006050	InterPro:IPR014729
RefSeq:NP_171935.1	RefSeq:NP_849588.1	PFAM:PF00875	PFAM:PF03441	PO:PO:0000005	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0005020	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44
UniProt:Q96524	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	EMBL:U43397
EMBL:U62549	EMBL:U62550	UniParc:UPI00001284E2	SEG:seg	:	:

Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]

Coordinates

chr1:-:1185512..1188696

Molecular Weight (calculated)

69460.6 Da

IEP (calculated)

5.826

GRAVY (calculated)

-0.344

Length

612 amino acids

Sequence
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.