Factsheet for Solyc09g090100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g059870.2.1
Solyc01g109700.2.1
Solyc05g053410.2.1
Solyc07g063120.2.1
Solyc09g090100.2.1
Solyc12g005950.1.1
Solyc12g013840.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	Solyc09g090100.2.1	AT1G04400.1	15805487
AT1G04400.1	Solyc07g063120.2.1	AT1G53090.1	22739826
AT1G04400.1	Solyc12g013840.1.1	AT1G53090.1	22739826
AT1G04400.1	Solyc01g059870.2.1	AT2G18790.1	11089975
AT1G04400.1	Solyc05g053410.2.1	AT2G18790.1	11089975
AT1G04400.1	Solyc12g005950.1.1	AT2G32950.1	11509693
AT1G04400.1	Solyc12g005950.1.1	AT2G32950.1	22739826
AT1G04400.1	Solyc01g109700.2.1	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044219	Potato	cytosol	96.38	94.59
CDX89827	Canola	cytosol, mitochondrion	48.19	70.51
VIT_05s0049g00960.t01	Wine grape	cytosol	69.61	68.42
KRH69122	Soybean	cytosol	64.41	68.17
KRG92422	Soybean	cytosol	67.72	67.82
CDY18229	Canola	cytosol, mitochondrion	60.63	66.84
KRH34384	Soybean	cytosol	67.24	66.51
Bra015313.1-P	Field mustard	cytosol	60.16	66.2
AT1G04400.1	Thale cress	cytosol	61.1	63.4
CDX86636	Canola	cytosol	61.73	63.33
Bra030568.1-P	Field mustard	cytosol	61.57	63.17
CDY15503	Canola	cytosol	61.1	62.48
KRH13218	Soybean	extracellular	7.87	59.52
GSMUA_Achr5P18570_001	Banana	cytosol	61.26	58.15
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	59.69	57.77
Os02t0625000-01	Rice	cytosol	57.01	55.61
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	57.17	55.59
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	56.85	55.28
TraesCS6B01G257600.2	Wheat	cytosol	56.22	54.92
HORVU6Hr1G058740.2	Barley	cytosol	56.38	54.57
EER88355	Sorghum	mitochondrion	54.96	53.36
Zm00001d045944_P007	Maize	cytosol	54.65	53.06
Solyc12g057040.1.1	Tomato	mitochondrion	48.35	52.66
Solyc04g074180.2.1	Tomato	cytosol	52.6	49.19
Solyc12g042910.1.1	Tomato	mitochondrion	20.94	24.68
Solyc08g074270.2.1	Tomato	nucleus	21.1	23.22
Solyc09g075180.2.1	Tomato	cytosol	11.5	16.15

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	ProteinID:AAF72557.1	EMBL:AF130425
InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C
InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050
InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	ScanProsite:PS00394	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	UniProt:Q9LDJ5	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
EnsemblPlantsGene:Solyc09g090100.2	EnsemblPlants:Solyc09g090100.2.1	TIGRFAMs:TIGR02766	UniParc:UPI000009CD00	SEG:seg	:

Description

Cryptochrome-2 [Source:Projected from Arabidopsis thaliana (AT1G04400) UniProtKB/Swiss-Prot;Acc:Q96524]

Coordinates

chr9:-:69643239..69647052

Molecular Weight (calculated)

72253.5 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.469

Length

635 amino acids

Sequence
(BLAST)

001: MESNYKTIVW FRRDLRIEDN PALAAAARNG SVLPVFIWCP KEEGQFYPGR VSRWWLKQSL IHLKQSLKSL GAELVLMKAQ STLSALTECV DAVGATKVVY
101: NHLYDPVSLV RDHNIKQKLG DLGISVQSYN GDLLNEPWEV YDDDGKVFTT FDAYWEKSLS IQNEPVSQLP PWRLTQAAGS VKMCSVEELG LENESEKSSN
201: ALLGKGWAPG WSNADKALTE FVESNLLAYS KDRLRVGGNS TSLLSPYLHF GEVSVRKVFN SVRLKQILWT KEGNSVGKDS ATIYLRAIGL REYSRYICFN
301: FPFTHERSLL NNLRFFPWNA DQAHFKAWRQ GRTGYPLVDA GMRELWATGW VHNKIRVIVS SFFVKFLLLP WQWGMKYFWD TLLDADLESD IIGWQYISGS
401: LPDGHELERL DNPEVQGFNY DPEGEYVRHW LPELARMPAE WIHHPWDAPL NVLKAAGVEL GMNYPNPIID VDVARDRLMQ AIIIMREKEA AVNTSHANGT
501: VEVVFDNSEN VGDSASIPKD DVVKGKEPCP SSSSYDQRVP SMQNVGTYRK RPKPEEETKK LNDNKLSYKN ERIKMSNVDG DLCSTAESSS MKKQMTVSRN
601: SFSVPRTITM SHDRKSFDDE ASSHVKLQKE EEIDT

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.