Factsheet for Solyc08g074270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076096	Potato	cytosol, plastid	91.16	96.51
VIT_04s0008g02670.t01	Wine grape	plastid	68.8	67.75
KRH61917	Soybean	plastid	64.82	64.04
AT5G24850.1	Thale cress	plastid	62.39	63.27
EER90163	Sorghum	plastid	63.08	63.08
Bra036524.1-P	Field mustard	plastid	60.14	62.86
Bra009798.1-P	Field mustard	cytosol	59.45	62.82
Os06t0661800-01	Rice	plastid	62.91	62.59
CDX88137	Canola	plastid	60.49	61.44
HORVU7Hr1G109800.2	Barley	plastid	62.56	60.88
GSMUA_Achr1P10510_001	Banana	plastid	58.93	60.82
TraesCS7A01G489800.1	Wheat	plastid	62.22	60.54
Zm00001d046935_P001	Maize	plastid	56.5	60.37
TraesCS7B01G392900.2	Wheat	plastid	61.7	59.53
TraesCS7D01G476200.1	Wheat	plastid	61.35	59.3
CDX87114	Canola	golgi	52.69	58.02
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	57.02	57.22
CDY19825	Canola	plastid	59.1	56.18
CDX80473	Canola	plastid	61.01	43.14
Solyc09g075180.2.1	Tomato	cytosol	22.36	28.54
Solyc12g042910.1.1	Tomato	mitochondrion	21.49	23.01
Solyc09g090100.2.1	Tomato	cytosol	23.22	21.1
Solyc12g057040.1.1	Tomato	mitochondrion	20.28	20.07
Solyc04g074180.2.1	Tomato	cytosol	21.14	17.97

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	ProteinID:ABB01166.2	InterPro:Cry_DASH
InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003913	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0018298	GO:GO:0019538	InterPro:IPR006050	InterPro:IPR014729
PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22
UniProt:Q38JU2	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	EnsemblPlantsGene:Solyc08g074270.2	EnsemblPlants:Solyc08g074270.2.1
TIGRFAMs:TIGR02765	UniParc:UPI0000D79F4D	:	:	:	:

Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q38JU2]

Coordinates

chr8:-:58368991..58374303

Molecular Weight (calculated)

66014.9 Da

IEP (calculated)

9.421

GRAVY (calculated)

-0.527

Length

577 amino acids

Sequence
(BLAST)

001: MIKQPFLLTK FTPFSSKSKH TLFTFHCNFS IKMASLTART TPTVQNVPGL TPEEMERVCE QTFQRYESGG LGKRKGKGVA IVWFRNDLRV LDNEALLRAW
101: VSSEAILPVY CVDPRLFGTT HYFGMPKTGA LRAQFIIECL NDLKRNLVKR GLDLLIQHGK PEDIVPSLAK AYKAHTVYAH KETCSEEVKV EKMVTRNLQK
201: LVSPSSGGIG NDPGSGNTTK LELVWGSTMY HIDDLPFDCE SLPDVYTQFR KSVEYKSKVR NCTKLPTSFG PPPEVGDWGH VPQVSELGLQ QEKVSKGMNF
301: VGGESAALGR VHDYFWKKDL LKVYKETRNG MLGADYSTKF SPWLASGSLS PRFIYEEVKR YEKERLSNDS TYWVLFELIW RDYFRFLSIK LANLLFQAGG
401: PQKVNINWSQ DQTMFDAWRR GQTGYPLIDA NMKELAATGY MSNRGRQIVC SFLVRDMGID WRMGAEWFET CLLDYDPCSN YGNWTYGAGV GNDPREDRYF
501: SIPKQAQNYD PEGEFVAYWL PELRALPREK RHSPGMMYLN PIVALKHGYT KKTGDSKTAF SSRRGRPEDN RRKRHGY

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.