CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036524.1-P	Field mustard	plastid	84.51	92.93
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	86.0	90.78
CDX88137	Canola	plastid	79.9	85.39
AT5G24850.1	Thale cress	plastid	78.42	83.66
CDX87114	Canola	golgi	72.16	83.59
CDX80473	Canola	plastid	88.3	65.69
KRH61917	Soybean	plastid	60.79	63.18
PGSC0003DMT400076096	Potato	cytosol, plastid	56.34	62.75
VIT_04s0008g02670.t01	Wine grape	plastid	58.32	60.41
Os06t0661800-01	Rice	plastid	56.51	59.14
Solyc08g074270.2.1	Tomato	nucleus	56.18	59.1
GSMUA_Achr1P10510_001	Banana	plastid	54.2	58.86
EER90163	Sorghum	plastid	55.35	58.23
HORVU7Hr1G109800.2	Barley	plastid	56.51	57.84
TraesCS7A01G489800.1	Wheat	plastid	55.85	57.17
TraesCS7D01G476200.1	Wheat	plastid	55.35	56.28
TraesCS7B01G392900.2	Wheat	plastid	55.35	56.19
Zm00001d046935_P001	Maize	plastid	49.92	56.11
CDY71211	Canola	cytosol	21.58	29.05
CDY71236	Canola	cytosol	21.75	29.01
CDX89827	Canola	cytosol, mitochondrion	17.46	24.42
CDY20139	Canola	cytosol, nucleus, plastid	21.42	23.17
CDY21853	Canola	mitochondrion, plastid	21.09	22.7
CDY18229	Canola	cytosol, mitochondrion	20.26	21.35
CDX80119	Canola	endoplasmic reticulum	18.95	21.02
CDX86636	Canola	cytosol	20.92	20.52
CDY15503	Canola	cytosol	20.92	20.45
CDY54706	Canola	cytosol	21.25	18.09
CDX75131	Canola	cytosol	21.25	18.09

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.150	Gene3D:3.40.50.620	MapMan:35.1	GO:A0A078FZS9
UniProt:A0A078FZS9	EnsemblPlants:CDY19825	ProteinID:CDY19825	ProteinID:CDY19825.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0003913	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006400
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008176	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0106004	EnsemblPlantsGene:GSBRNA2T00009585001	InterPro:IPR006050	InterPro:IPR014729
PFAM:PF00875	PFAM:PF02390	PFAM:PF03441	PRINTS:PR00147	PFscan:PS51645	PANTHER:PTHR11455
PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	InterPro:SAM-dependent_MTases	SUPFAM:SSF48173	SUPFAM:SSF52425	SUPFAM:SSF53335
TIGRFAMs:TIGR02765	TMHMM:TMhelix	UniPathway:UPA00989	UniParc:UPI0004EDEB97	SEG:seg	:

Description

BnaA09g04780DBnaA09g04780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZS9]

Coordinates

chrLK032100:+:546074..550530

Molecular Weight (calculated)

69447.1 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.422

Length

607 amino acids

Sequence
(BLAST)

001: MSASSFSSPL THPLRRFNHH HLSNKPVSSL FFCSAAKMNG NIHRVPGTTI LWFRNDLRVL DNDALYKAWC SSDTVLPVYC LDPRLFHTTH FFSFPKTGAL
101: RGAFLMECLA DLRKNLMRRG LNLLIRSGKP EDILPSLAKD FGAHTVFAHK ETCSEELHVE RLVDKALKGV GNGTKLELIW GSTMYHKDDL PFDVLDLPDI
201: YTQFRKSVEA NCRIRSSTRI PLSLGPTPCV DKWGDVPTLS QLGLEPQEVT RGMRFVGGES AGVGRVFEYF WKKAKIKPLS SSFLYYDTDL LKVYKETRNG
301: MLGPDYSTKF SPWLAFGCIS PRFIYEEVQR YERERVANNS TYWVLFELLW RDYFRFLSIK CGNSLFHLGG PRNVQGEWSQ DKRLFESWRD GKTGYPLIDA
401: NMKELSTTGF MSNRGRQIVC SFLVRDMGLD WRMGAEWFET CLLDYDPCSN YGNWTYGAGV GNDPREDRYF SIPKQAQNYD PEGEYVAFWV QQLRRLPKEK
501: RHWPGRLMYM DTVVPLKHGH GGGNAQTSRG SKSRGGFRDN HSGRQSRNHL FFEYIGCGFG GLLISLATLF PGTLMIGMEL RDKVAEYVKE RILALRKTSS
601: GGGEYEN

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.