CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009798.1-P	Field mustard	cytosol	91.02	94.69
AT5G24850.1	Thale cress	plastid	86.44	86.29
CDX87114	Canola	golgi	73.94	80.15
CDY19825	Canola	plastid	85.39	79.9
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	79.05	78.09
CDX80473	Canola	plastid	94.89	66.05
PGSC0003DMT400076096	Potato	cytosol, plastid	61.44	64.04
KRH61917	Soybean	plastid	63.91	62.16
VIT_04s0008g02670.t01	Wine grape	plastid	63.03	61.09
Solyc08g074270.2.1	Tomato	nucleus	61.44	60.49
GSMUA_Achr1P10510_001	Banana	plastid	57.75	58.68
Os06t0661800-01	Rice	plastid	59.51	58.28
EER90163	Sorghum	plastid	58.8	57.89
HORVU7Hr1G109800.2	Barley	plastid	59.68	57.17
TraesCS7A01G489800.1	Wheat	plastid	59.15	56.66
Zm00001d046935_P001	Maize	plastid	53.17	55.93
TraesCS7D01G476200.1	Wheat	plastid	58.45	55.61
TraesCS7B01G392900.2	Wheat	plastid	58.45	55.52
CDY71211	Canola	cytosol	24.12	30.38
CDY71236	Canola	cytosol	23.94	29.89
CDX89827	Canola	cytosol, mitochondrion	18.13	23.73
CDY21853	Canola	mitochondrion, plastid	22.18	22.34
CDY20139	Canola	cytosol, nucleus, plastid	22.01	22.28
CDX80119	Canola	endoplasmic reticulum	20.25	21.02
CDY18229	Canola	cytosol, mitochondrion	21.13	20.83
CDX86636	Canola	cytosol	22.01	20.19
CDY15503	Canola	cytosol	22.01	20.13
CDY54706	Canola	cytosol	22.18	17.67
CDX75131	Canola	cytosol	22.18	17.67

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	GO:A0A078DGR0	EnsemblPlants:CDX88137
ProteinID:CDX88137	ProteinID:CDX88137.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd
InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0003913	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00147577001	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147
PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
TIGRFAMs:TIGR02765	UniParc:UPI0004EDC6BB	SEG:seg	:	:	:

Description

BnaA06g27280D

Coordinates

chrLK031854:-:859788..862593

Molecular Weight (calculated)

64380.8 Da

IEP (calculated)

9.383

GRAVY (calculated)

-0.481

Length

568 amino acids

Sequence
(BLAST)

001: MAASSLSSPL THPLRRFSFH LSHLSKKPPV SSLFLCSAGK MNGHIHRVPA LDEEEMESVA GKTFERYALP SSAKRNGKGV AILWFRNDLR VLDNDALYRA
101: WSSSDTLLPV YCLDPRLFHT THYFSFPKTG ALRGAFLMEC LADLRKNLMR RGLNLLIRSG KPEDILPSLA KDFGAHSVFG HKETCSEELH VERLVGQALK
201: GAGNGTKLEL IWGSTMYHKD DLPFDVLDLP EMYTQFRKSV EAKCRIRSST RIPISLGPTP SVDNWGDVPT LGQLGIEPQE VTRGMRFLGG ESAGDLLKVY
301: KETRNGMLGA DYSTKFSPWL AFGCISPRFI YEEVQRYERE RVANNSTYWV LFELIWRDYF RFLSIKCGNS LFHLGGPRNV QGEWSQDKKL FEAWRDGKTG
401: YPIIDANMKE LSTTGFMSNR GRQIVCSFLV RDMGLDWRMG AEWFETCLLD YDPCSNYGNW TYGAGVGNDP REDRYFSIPK QAQNYDPEGE YVAFWVQQLR
501: RLPKEKRHWP GRLMYMDTVV PLKHGHHGGG GNAQTSRGSK SSGGGFRGNH SGRRSRHNVT VIARVNSN

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.