Factsheet for Os06t0661800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	mitochondrion, plastid
PProwler:	plastid
TargetP:	plastid
YLoc:	plastid

mitochondrion: 23257241
plastid: 23257241

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90163	Sorghum	plastid	84.31	84.75
TraesCS7A01G489800.1	Wheat	plastid	85.17	83.31
HORVU7Hr1G109800.2	Barley	plastid	84.83	82.97
Zm00001d046935_P001	Maize	plastid	76.38	82.04
TraesCS7D01G476200.1	Wheat	plastid	84.14	81.74
TraesCS7B01G392900.2	Wheat	plastid	84.14	81.61
GSMUA_Achr1P10510_001	Banana	plastid	66.9	69.41
PGSC0003DMT400076096	Potato	cytosol, plastid	62.59	66.61
VIT_04s0008g02670.t01	Wine grape	plastid	66.38	65.7
KRH61917	Soybean	plastid	64.48	64.04
AT5G24850.1	Thale cress	plastid	61.9	63.09
Solyc08g074270.2.1	Tomato	nucleus	62.59	62.91
Bra036524.1-P	Field mustard	plastid	59.48	62.5
Bra009798.1-P	Field mustard	cytosol	57.24	60.81
CDX88137	Canola	plastid	58.28	59.51
CDX87114	Canola	golgi	52.41	58.02
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	56.55	57.04
CDY19825	Canola	plastid	59.14	56.51
CDX80473	Canola	plastid	60.52	43.01
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	23.62	29.85
Os02t0204400-00	Rice	plastid	22.93	24.14
Os02t0625000-01	Rice	cytosol	22.41	19.97
Os02t0573200-01	Rice	cytosol	22.76	18.38
Os04t0452100-02	Rice	cytosol	21.9	18.14

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	UniProt:A0A0P0X023	ProteinID:BAF20192.1
ProteinID:BAS98989.1	ProteinID:BAS98990.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd
InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003913	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0018298
GO:GO:0019538	InterPro:IPR006050	InterPro:IPR014729	EnsemblPlantsGene:Os06g0661800	EnsemblPlants:Os06t0661800-01	PFAM:PF00875
PFAM:PF03441	PRINTS:PR00147	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02765	UniParc:UPI000393B7DF	SEG:seg	:

Description

Similar to Cryptochrome DASH, chloroplastic/mitochondrial. (Os06t0661800-01);Similar to Cryptochrome dash (Fragment). (Os06t0661800-02)

Coordinates

chr6:-:27275526..27278844

Molecular Weight (calculated)

65101.4 Da

IEP (calculated)

9.526

GRAVY (calculated)

-0.431

Length

580 amino acids

Sequence
(BLAST)

001: HFLSSSSPLN PQFLLLPRQS ARLRVLLSIP VSAMSSSSSS SSRGALAAAA VPSLSADEAG AAADEAFLRY TSPSMRRSGG GGVAIVWFRN DLRVLDNEAV
101: VRAWAASDAV LPVYCVDPRI SAGSTHYFGF PKTGALRAQF LIECLEDLKR NLTKQGLDLL IRHGKPEDIL PSIAKAVTAH TVYAHKETCS EELLVEHLVR
201: KGLEQVVIPQ GGASNQKKPR NPKLQLIWGA TLYHVDDLPF SVNNLPDVYT QFRKAVESKS SVRNCSKLPP SLGPPPGSGL DEIGGWGTVP TLESLGLSMT
301: KAEKGMHFVG GESAALGRVH EYFWKKDQLK VYKETRNGML GPDYSTKFSP WLASGSLSPR YICEEVKRYE KQRIANDSTY WVLFELIWRD YFRFISAKYG
401: NSIFHLGGPR NVESKWSQDQ ALFESWRDGR TGYPLIDANM KELLATGFMS NRGRQIVCSF LVRDMGIDWR MGAEWFETCL LDYDPASNYG NWTYGAGVGN
501: DPREDRYFSI PKQAKTYDPD GEYVAYWLPE LRSIAKERRN FPGASYIKQV VPLKFDGGHQ KRDQQFNRQR RPGHMYRRQK

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.