Factsheet for Bra036524.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009798.1-P	Field mustard	cytosol	85.51	86.45
AT5G24850.1	Thale cress	plastid	87.5	84.89
CDY19825	Canola	plastid	92.93	84.51
PGSC0003DMT400076096	Potato	cytosol, plastid	63.22	64.04
KRH61917	Soybean	plastid	67.03	63.36
VIT_04s0008g02670.t01	Wine grape	plastid	64.86	61.09
Solyc08g074270.2.1	Tomato	nucleus	62.86	60.14
Os06t0661800-01	Rice	plastid	62.5	59.48
GSMUA_Achr1P10510_001	Banana	plastid	59.6	58.86
EER90163	Sorghum	plastid	61.05	58.41
HORVU7Hr1G109800.2	Barley	plastid	62.32	58.01
TraesCS7A01G489800.1	Wheat	plastid	61.96	57.67
Zm00001d046935_P001	Maize	plastid	55.43	56.67
TraesCS7D01G476200.1	Wheat	plastid	60.87	56.28
TraesCS7B01G392900.2	Wheat	plastid	60.87	56.19
Bra004444.1-P	Field mustard	cytosol	24.82	30.11
Bra021122.1-P	Field mustard	cytosol	12.68	21.34
Bra015313.1-P	Field mustard	cytosol	22.1	21.14
Bra030568.1-P	Field mustard	cytosol	23.01	20.52
Bra037880.1-P	Field mustard	cytosol	23.01	18.68

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	Gene3D:3.40.50.620	MapMan:35.1	EnsemblPlantsGene:Bra036524	EnsemblPlants:Bra036524.1
EnsemblPlants:Bra036524.1-P	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1
InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0003913	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR006050
InterPro:IPR014729	UniProt:M4F615	PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02765
UniParc:UPI0002541C77	SEG:seg	:	:	:	:

Description

AT5G24850 (E=1e-144) CRY3 | CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding

Coordinates

chrA09:-:1581159..1584170

Molecular Weight (calculated)

62844.9 Da

IEP (calculated)

8.794

GRAVY (calculated)

-0.498

Length

552 amino acids

Sequence
(BLAST)

001: MSASSFSSPL THPLRRFNHH HLSNKPVSSL FFCSAAKMNG NIHCVPGLGE EEMDTVVGKT FERYALPSSS SSSSKRTGKG TTILWFRNDL RVLDNDALYK
101: AWCSSDTVLP VYCLDPRLFH TTHFFSFPKT GALRGAFLME CLADLRKNLM RRGLNLLIRN GKPEDILPSL AKDFGAHTVF AHKETCSEEL HVERLVDKAL
201: KGVGNGTKLE LIWGSTMYHK DDLPFDVLDL PDIYTQFRKS VEANCRIRSS TRIPLSLGPT PCVDKWGDVP TLGQLGLEPQ EVTRGMRFVG GESAGDLLKV
301: YKETRNGMLG PDYSTKFSPW LAFGCISPRF IYEEVQRYER ERIANNSTYW VLFELLWRDY FRFLSIKCGN SLFHLGGPRN VQGEWSQDKR LFESWRDGKT
401: GYPLIDANMK ELSTTGFMSN RGRQIVCSFL VRDMGLDWRM GAEWFETCLL DYDPCSNYGN WTYGAGVGND PREDRYFSIP KQAQNYDPEG EYVAFWVQQL
501: RRLPKEKRHC PGRLMYMDTV VPLKHGHGGG NAQTSRGSKS RGGFRDNHSG RR

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.