Factsheet for VIT_04s0008g02670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076096	Potato	cytosol, plastid	67.06	72.11
KRH61917	Soybean	plastid	70.31	70.55
Solyc08g074270.2.1	Tomato	nucleus	67.75	68.8
Os06t0661800-01	Rice	plastid	65.7	66.38
EER90163	Sorghum	plastid	64.85	65.86
GSMUA_Achr1P10510_001	Banana	plastid	62.29	65.3
AT5G24850.1	Thale cress	plastid	63.14	65.03
Bra036524.1-P	Field mustard	plastid	61.09	64.86
Bra009798.1-P	Field mustard	cytosol	60.07	64.47
HORVU7Hr1G109800.2	Barley	plastid	64.68	63.91
Zm00001d046935_P001	Maize	plastid	58.7	63.7
TraesCS7A01G489800.1	Wheat	plastid	64.33	63.58
CDX88137	Canola	plastid	61.09	63.03
TraesCS7D01G476200.1	Wheat	plastid	63.65	62.48
TraesCS7B01G392900.2	Wheat	plastid	63.65	62.37
CDX87114	Canola	golgi	53.07	59.35
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	57.85	58.96
CDY19825	Canola	plastid	60.41	58.32
CDX80473	Canola	plastid	62.12	44.61
VIT_07s0005g00590.t01	Wine grape	cytosol	24.23	31.28
VIT_09s0002g05990.t01	Wine grape	mitochondrion	22.01	23.98
VIT_05s0049g00960.t01	Wine grape	cytosol	23.55	21.36
VIT_18s0001g05680.t01	Wine grape	cytosol	21.67	18.38

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	EntrezGene:100252689	wikigene:100252689	Gene3D:3.40.50.620	MapMan:35.1
ProteinID:CBI20785	ProteinID:CBI20785.3	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd
InterPro:Cryptochrome/DNA_photolyase_1	UniProt:D7SU36	InterPro:DNA_photolyase_N	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824
GO:GO:0003913	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR006050	InterPro:IPR014729	EntrezGene:LOC100252689	wikigene:LOC100252689
PFAM:PF00875	PFAM:PF03441	PRINTS:PR00147	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGR:TC61475	TIGRFAMs:TIGR02765	UniParc:UPI0001BE1C7F
ArrayExpress:VIT_04s0008g02670	EnsemblPlantsGene:VIT_04s0008g02670	EnsemblPlants:VIT_04s0008g02670.t01	unigene:Vvi.10290	RefSeq:XP_002280771	RefSeq:XP_002280771.1
RefSeq:XP_002280771.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:2199114..2209197

Molecular Weight (calculated)

66507.2 Da

IEP (calculated)

9.400

GRAVY (calculated)

-0.448

Length

586 amino acids

Sequence
(BLAST)

001: MAVLSSSLSA FFIKKLVHPS KPTSIFSHYS THPHLSAMNF PPRSKPGSAA SATTSEVPDL PSNEMGKIVE QTFQRYSSSD EAKRNGSGVA IVWFRNDLRV
101: LDNEALVKAW ASSQAVLPVY CVDPRLFGTT HYFGFPKTGA LRAQFLIECL ADLKRNLMNR GLNLLIQHGK PEEILPSLAK TFEAHTVYAH KETCSEELNV
201: ERLVRNGLRQ VVLPPSPGQS TSLSSSNHPK LQLIWGSTMY HIEDLPFSTS SLPDVYTQFR KSVESKCTIR ICIRTPTLLG PPPNIEDWGS VPSIDQLGLH
301: EEKVSRGMRF IGGEAAALSR VNEYFWKKDL LKVYKATRNG MLGADYSTKF SPWLASGSLS PRFIYQEVKR YEKERQANDS TYWVLFELIW RDYFRFLSVK
401: YRNSLFHLGG PRKVEARWSQ DQTMFEAWRD GCTGYPLIDA NMKELSATGF MSNRGRQIVC SFLVRDMGID WRMGAEWFET CLLDYDPCSN YGNWTYGAGV
501: GNDPREDRYF SIPKQAKTYD PEGEYVAFWL PELQALPNDK RNFPGKSYIN QIVPLKFGNI TSSGDKDSAS ARRTAFRGKQ RKGHMR

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.