CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g02670.t01	Wine grape	plastid	70.55	70.31
PGSC0003DMT400076096	Potato	cytosol, plastid	63.53	68.07
Bra036524.1-P	Field mustard	plastid	63.36	67.03
AT5G24850.1	Thale cress	plastid	64.9	66.61
Bra009798.1-P	Field mustard	cytosol	61.13	65.38
EER90163	Sorghum	plastid	64.38	65.16
Solyc08g074270.2.1	Tomato	nucleus	64.04	64.82
Os06t0661800-01	Rice	plastid	64.04	64.48
GSMUA_Achr1P10510_001	Banana	plastid	61.47	64.22
CDX88137	Canola	plastid	62.16	63.91
TraesCS7A01G489800.1	Wheat	plastid	64.04	63.07
Zm00001d046935_P001	Maize	plastid	58.05	62.78
HORVU7Hr1G109800.2	Barley	plastid	63.01	62.06
TraesCS7B01G392900.2	Wheat	plastid	63.53	62.04
CDX87114	Canola	golgi	55.65	62.02
TraesCS7D01G476200.1	Wheat	plastid	63.18	61.81
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	60.79	61.74
CDY19825	Canola	plastid	63.18	60.79
CDX80473	Canola	plastid	63.36	45.34
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	23.97	31.82
KRH69286	Soybean	plastid	23.8	29.89
KRH13218	Soybean	extracellular	3.42	23.81
KRH44412	Soybean	mitochondrion, plastid	21.75	22.56
KRH69122	Soybean	cytosol	21.23	20.67
KRH34384	Soybean	cytosol	22.26	20.25
KRG92422	Soybean	cytosol	21.92	20.19
KRH53063	Soybean	cytosol	21.06	18.04
KRH62344	Soybean	cytosol	20.72	17.77
KRH18908	Soybean	cytosol	20.72	17.77
KRH16735	Soybean	cytosol	20.72	17.77

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	EntrezGene:100783312	Gene3D:3.40.50.620	MapMan:35.1	EMBL:ACUP02002199
InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N
EnsemblPlantsGene:GLYMA_04G074500	GO:GO:0003674	GO:GO:0003824	GO:GO:0003913	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	UniProt:I1JUL6
InterPro:IPR006050	InterPro:IPR014729	EnsemblPlants:KRH61917	ProteinID:KRH61917	ProteinID:KRH61917.1	PFAM:PF00875
PFAM:PF03441	PRINTS:PR00147	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02765	UniParc:UPI0002954D47	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:6201126..6206476

Molecular Weight (calculated)

66587.3 Da

IEP (calculated)

9.302

GRAVY (calculated)

-0.437

Length

584 amino acids

Sequence
(BLAST)

001: MAILHCTSLP FLSLRTTISS SKSTLTSTRI PLFLAMNSFA KSEPVSSSAS SSSSTYQQVP EQDANNDLDR VADNTFRRYT SNVTKGSGKG TAIVWFRNDL
101: RVLDNEALYK AWLSSETVLP VYCVDPRLFA TTYHFGFPKT GALRAQFLLE CLADLRKNLM KRGLNLLVQH GKPEEILPSL AKSFQAHTVY AQKETCSEEL
201: NVERLVMRGL KQVVTSPEES SGITVSNNIP KLQLVWGTTM YHLDDLPFDA TSLPDVYTQF RKLVETKCTI RSCIKLPASL GPPPTVQDWG CLPSLEQLGL
301: SSQSVNKGMK FVGGETAALS RVYEYFWKKD LLRVYKETRN GMLGPDYSTK FSPWLASGSL SPRFIYEEVK RYENDRLANS STYWVLFELI WRDYFRFLSV
401: KYGNSLFHLG GPRKVQRNWS QDKNLFESWR DGCTGYPLID ANMKELSTTG FMSNRGRQIV CSFLVRDMGI DWRMGAEWFE TCLLDYDPCS NYGNWTYGSG
501: VGNDPREDRY FSIPKQAQTY DPEGEYVAYW LPQLRKIPKE KRNFPGNLIY IPQIVPLKFG TTSGHNKDKF FGARRTNDRG SKRR

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.