CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88137	Canola	plastid	66.05	94.89
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	64.71	91.83
CDY19825	Canola	plastid	65.69	88.3
AT5G24850.1	Thale cress	plastid	61.52	88.22
CDX87114	Canola	golgi	51.72	80.53
PGSC0003DMT400076096	Potato	cytosol, plastid	43.5	65.14
KRH61917	Soybean	plastid	45.34	63.36
VIT_04s0008g02670.t01	Wine grape	plastid	44.61	62.12
Solyc08g074270.2.1	Tomato	nucleus	43.14	61.01
Os06t0661800-01	Rice	plastid	43.01	60.52
EER90163	Sorghum	plastid	42.16	59.62
GSMUA_Achr1P10510_001	Banana	plastid	40.81	59.57
HORVU7Hr1G109800.2	Barley	plastid	42.89	59.02
TraesCS7A01G489800.1	Wheat	plastid	42.4	58.35
Zm00001d046935_P001	Maize	plastid	38.11	57.59
TraesCS7D01G476200.1	Wheat	plastid	42.03	57.45
TraesCS7B01G392900.2	Wheat	plastid	42.03	57.36
CDY71211	Canola	cytosol	16.91	30.6
CDY71236	Canola	cytosol	16.79	30.11
CDX89827	Canola	cytosol, mitochondrion	12.62	23.73
CDY20139	Canola	cytosol, nucleus, plastid	15.69	22.82
CDY21853	Canola	mitochondrion, plastid	15.69	22.7
CDX80119	Canola	endoplasmic reticulum	14.09	21.02
CDY18229	Canola	cytosol, mitochondrion	14.83	21.01
CDX86636	Canola	cytosol	15.81	20.84
CDY15503	Canola	cytosol	15.81	20.77
CDY54706	Canola	cytosol	15.69	17.95
CDX75131	Canola	cytosol	15.69	17.95

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:16.6.7.1.1	Gene3D:3.40.50.150	Gene3D:3.40.50.620	GO:A0A078CZD7
EnsemblPlants:CDX80473	ProteinID:CDX80473	ProteinID:CDX80473.1	InterPro:Cry_DASH	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0003913
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006400	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008176	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00133564001	InterPro:IPR003358
InterPro:IPR006050	InterPro:IPR014729	HAMAP:MF_03055	PFAM:PF00875	PFAM:PF02390	PFAM:PF03441
PRINTS:PR00147	PFscan:PS51625	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF22	InterPro:Rossmann-like_a/b/a_fold
InterPro:SAM-dependent_MTases	SUPFAM:SSF48173	SUPFAM:SSF52425	SUPFAM:SSF53335	TIGRFAMs:TIGR00091	TIGRFAMs:TIGR02765
InterPro:Trm8_euk	UniPathway:UPA00989	UniParc:UPI0004EE69D8	SEG:seg	InterPro:tRNA_(Gua-N-7)_MeTrfase_Trmb	:

Description

BnaC07g29710D

Coordinates

chrLK031821:-:739454..743951

Molecular Weight (calculated)

92587.7 Da

IEP (calculated)

9.120

GRAVY (calculated)

-0.419

Length

816 amino acids

Sequence
(BLAST)

001: MAASSLSSPL SHPLRRFSLH LSHLSKKKPV SSLFLCSAAK MNGHIYRVPA LDEEEMNSVA GKTFERYALP SSSSAAKRNG KGVAILWFRN DLRVLDNDAL
101: YRAWSSSDTL LPVYCLDPRL FHTTHYFAFP KTGALRGAFL MECLADLRNN LIKRGLNLLI RSGKPEDILP SLAKDFGAHT VLAHKETCSE ELHVERLVRQ
201: ALKGVGNGTK LELIWGSTMY HKDDLPFDVL DLPDMYTQFR KSVEAKCMIR SSTRVPISLG PTPSVDNWGD VPTLGQLGIE PQEVTRGMRF VGGESAGVGR
301: DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYERERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGEW SQDKKLFESW
401: RDGKTGYPII DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN YDPEGEYVAF
501: WVQQLRRLPK EKRHWPGRLM YMDTVVPLKH GHGGGSAQTS RGSKSSGGGG FRGNHSGRRS RHNVIMESET KPTFSKSTGL PRKRFYRARA HSNPLSDSHF
601: PIPISPSHVD FSLHFPKFVG TNNEEVSKKV EFADIGCGFG GLLISLATLF PDTLMIGMEL RDKVTEYVKE RILALRKTSS GGQYENVSVV RTNSMKYIPN
701: YFEKGQLSKM FFLFPDPHFK EKNHRRRVIS VDLLDEYAYV LRAGGVIYTI TDVEELGEWM RSCLEKHPMF ESLTHEELDS DPVVELLCSA TEEGQKVARN
801: GGQTFRAVFR RIAYVS

Best Arabidopsis Sequence Match ( AT5G24850.1 )
(BLAST)

001: MAASSLSLSS PLSNPLRRFT LHHLHLSKKP LSSSSLFLCS AAKMNDHIHR VPALTEEEID SVAIKTFERY ALPSSSSVKR KGKGVTILWF RNDLRVLDND
101: ALYKAWSSSD TILPVYCLDP RLFHTTHFFN FPKTGALRGG FLMECLVDLR KNLMKRGLNL LIRSGKPEEI LPSLAKDFGA RTVFAHKETC SEEVDVERLV
201: NQGLKRVGNS TKLELIWGST MYHKDDLPFD VFDLPDVYTQ FRKSVEAKCS IRSSTRIPLS LGPTPSVDDW GDVPTLEKLG VEPQEVTRGM RFVGGESAGV
301: GRVFEYFWKK DLLKVYKETR NGMLGPDYST KFSPWLAFGC ISPRFIYEEV QRYEKERVAN NSTYWVLFEL IWRDYFRFLS IKCGNSLFHL GGPRNVQGKW
401: SQDQKLFESW RDAKTGYPLI DANMKELSTT GFMSNRGRQI VCSFLVRDMG LDWRMGAEWF ETCLLDYDPC SNYGNWTYGA GVGNDPREDR YFSIPKQAQN
501: YDPEGEYVAF WLQQLRRLPK EKRHWPGRLM YMDTVVPLKH GNGPMAGGSK SGGGFRGSHS GRRSRHNGP

Arabidopsis Description

CRYDCryptochrome DASH, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84KJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.