CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71236	Canola	cytosol	96.9	96.04
Bra004444.1-P	Field mustard	cytosol	96.23	95.38
AT2G47590.1	Thale cress	cytosol	88.47	89.26
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	64.97	66.59
VIT_07s0005g00590.t01	Wine grape	cytosol	66.96	66.52
PGSC0003DMT400081378	Potato	cytosol	64.3	64.02
Solyc09g075180.2.1	Tomato	cytosol	64.08	63.94
KRH69286	Soybean	plastid	62.53	60.65
CDX80119	Canola	endoplasmic reticulum	72.06	59.41
GSMUA_AchrUn_...	Banana	cytosol	18.18	57.75
GSMUA_Achr5P21430_001	Banana	cytosol	51.88	51.32
TraesCS7A01G344600.1	Wheat	plastid	48.12	48.55
Zm00001d029105_P001	Maize	plastid	47.89	48.43
TraesCS7D01G334900.2	Wheat	plastid	47.89	48.43
EER94877	Sorghum	cytosol, plastid	47.23	47.65
GSMUA_AchrUn_...	Banana	plastid	34.15	47.38
Zm00001d047501_P001	Maize	plastid	46.78	47.31
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	47.89	47.06
TraesCS7B01G238500.1	Wheat	cytosol, plastid	45.23	45.43
HORVU7Hr1G080580.2	Barley	plastid	46.78	43.78
CDX88137	Canola	plastid	30.38	24.12
CDX87114	Canola	golgi	25.5	21.95
CDY19825	Canola	plastid	29.05	21.58
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	27.49	21.57
CDX80473	Canola	plastid	30.6	16.91
CDX89827	Canola	cytosol, mitochondrion	14.86	15.44
CDY20139	Canola	cytosol, nucleus, plastid	19.07	15.33
CDY21853	Canola	mitochondrion, plastid	19.07	15.25
CDY18229	Canola	cytosol, mitochondrion	15.74	12.33
CDX86636	Canola	cytosol	16.19	11.79
CDY15503	Canola	cytosol	16.19	11.76
CDX75131	Canola	cytosol	15.52	9.82
CDY54706	Canola	cytosol	15.52	9.82

Protein Annotations

EnsemblPlants:CDY71211	EnsemblPlantsGene:GSBRNA2T00012123001	Gene3D:1.25.40.80	Gene3D:3.40.50.620	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:DNA_photolyase_N	InterPro:IPR006050	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	ncoils:Coil	PANTHER:PTHR11455
PANTHER:PTHR11455:SF2	PFAM:PF00875	PFscan:PS51645	ProteinID:CDY71211	ProteinID:CDY71211.1	SEG:seg
SUPFAM:SSF48173	SUPFAM:SSF52425	UniParc:UPI0004EC229A	UniProt:A0A078K047	MapMan:35.1	:

Description

BnaCnng71870DBnaCnng71870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K047]

Coordinates

chrLK044929:+:303..2262

Molecular Weight (calculated)

49203.3 Da

IEP (calculated)

7.868

GRAVY (calculated)

-0.291

Length

451 amino acids

Sequence
(BLAST)

001: MESKVVVDAE TKSTEEEEAL AIVTSPSLPI ASLSLSFSPL STTTTQFRFS HLFAHHPNKV KIPTQASYLT HLSLSSLSPS PSRVSSFKST FSANPFHSPL
101: SIVPRRPVDP SSAAALRRSA VVWFRNDLRV HDNECLNSAN DECLSLLPVY CFDPRDYGKS SSGFDKTGPF RAQFLIESVS ELRKNLEARG SNLVVRVGKP
201: EAVLVELAKE IGADAIYAHR EVSHDEVKAE GKIESAMKEE GVEVNYFWGS TLYHLDDLPF KVEDLPSNYG AFKDKVQKLE IRKTIAALDQ LKSLPSRGDV
301: QLGDIPSLLD LGINPSARTS QEGKPTMVGG ETEALTRLKS FAADCQARLA KGGNQKGGNN SVFGANFSCK ISPWLAMGSI SPRSMFDELK KTISASTTPS
401: APRNGPGDTG LNWLMYELLW RDFFRFITKK YSSAKTQVEA GPATACTGAL A

Best Arabidopsis Sequence Match ( AT2G47590.1 )
(BLAST)

001: MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV
101: PRRPVDPSSA AALRRAAVVW FRNDLRVHDN ECLNSANDEC VSVLPVYCFD PRDYGKSSSG FDKTGPFRAQ FLIESVSELR KNLQARGSNL VVRVGKPEAV
201: LVELAKEIGA DAVYAHREVS HDEVKAEGKI ETAMKEEGVE VKYFWGSTLY HLDDLPFKIE DLPSNYGAFK DKVQKLEIRK TIAALDQLKS LPSRGDVELG
301: DIPSLLDLGI SPTPRTSQEG KPTMVGGETE ALTRLKSFAA DCQARLSKGN QKGGNNSVFG ANFSCKISPW LAMGSISPRS MFDELKKTIS ASTTSTTPRN
401: GPGDTGLNWL MYELLWRDFF RFITKKYSSA KTQVEAGPAT ACTGAFA

Arabidopsis Description

PHR2At2g47590 [Source:UniProtKB/TrEMBL;Acc:Q058P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.