CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69067
CDX75440
CDX75900
CDX76288
CDX82382
CDX86636
CDX89827
CDX92112
CDX95888
CDY12145
CDY15503
CDY17466
CDY18229
CDY25880
CDY50512
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	CDX86636	AT1G04400.1	15805487
AT1G04400.1	CDX89827	AT1G04400.1	15805487
AT1G04400.1	CDY15503	AT1G04400.1	15805487
AT1G04400.1	CDY18229	AT1G04400.1	15805487
AT1G04400.1	CDY25880	AT1G53090.1	22739826
AT1G04400.1	CDY50512	AT1G53090.1	22739826
AT1G04400.1	CDX75900	AT2G18790.1	11089975
AT1G04400.1	CDX82382	AT2G18790.1	11089975
AT1G04400.1	CDX92112	AT2G18790.1	11089975
AT1G04400.1	CDX95888	AT2G18790.1	11089975
AT1G04400.1	CDY12145	AT2G32950.1	11509693
AT1G04400.1	CDY52540	AT2G32950.1	11509693
AT1G04400.1	CDY12145	AT2G32950.1	22739826
AT1G04400.1	CDY52540	AT2G32950.1	22739826
AT1G04400.1	CDX69067	AT4G34530.1	22739826
AT1G04400.1	CDX75440	AT4G34530.1	22739826
AT1G04400.1	CDX76288	AT4G34530.1	22739826
AT1G04400.1	CDY17466	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15503	Canola	cytosol	98.22	97.91
AT1G04400.1	Thale cress	cytosol	90.79	91.83
CDY18229	Canola	cytosol, mitochondrion	83.04	89.24
CDX89827	Canola	cytosol, mitochondrion	62.04	88.48
KRG92422	Soybean	cytosol	66.72	65.14
KRH69122	Soybean	cytosol	62.04	64.0
KRH34384	Soybean	cytosol	65.59	63.24
Solyc09g090100.2.1	Tomato	cytosol	63.33	61.73
VIT_05s0049g00960.t01	Wine grape	cytosol	64.14	61.46
PGSC0003DMT400044219	Potato	cytosol	63.97	61.21
KRH13218	Soybean	extracellular	8.08	59.52
GSMUA_Achr5P18570_001	Banana	cytosol	59.61	55.16
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	56.38	53.2
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	54.77	51.91
Os02t0625000-01	Rice	cytosol	54.44	51.77
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	54.6	51.76
HORVU6Hr1G058740.2	Barley	cytosol	54.77	51.68
TraesCS6B01G257600.2	Wheat	cytosol	54.12	51.54
EER88355	Sorghum	mitochondrion	53.15	50.31
Zm00001d045944_P007	Maize	cytosol	52.99	50.15
CDY54706	Canola	cytosol	51.53	44.74
CDX75131	Canola	cytosol	51.53	44.74
CDY21853	Canola	mitochondrion, plastid	23.75	26.06
CDY20139	Canola	cytosol, nucleus, plastid	23.42	25.85
CDX88137	Canola	plastid	20.19	22.01
CDX87114	Canola	golgi	18.58	21.95
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	19.55	21.04
CDY19825	Canola	plastid	20.52	20.92
CDY71236	Canola	cytosol	12.12	16.48
CDY71211	Canola	cytosol	11.79	16.19
CDX80473	Canola	plastid	20.84	15.81
CDX80119	Canola	endoplasmic reticulum	10.34	11.7

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	GO:A0A078DBJ5	EnsemblPlants:CDX86636
ProteinID:CDX86636	ProteinID:CDX86636.1	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1
InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987
GO:GO:0038023	EnsemblPlantsGene:GSBRNA2T00145300001	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441
PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI0004EAFCAB	SEG:seg

Description

BnaC08g00670D

Coordinates

chrLK031846:+:1263764..1266925

Molecular Weight (calculated)

70240.5 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.335

Length

619 amino acids

Sequence
(BLAST)

001: MSTNKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLTQSLKAL GSELTLIKTH NTVSAILDCV RATGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTN FNSYWKKCLD MPVESVVIPP PWRLIPLTAA GTVWACSIEE LGLENEAEKP
201: SNALLTRAWS PGWSNADKIL TEFIEKQLID YAKNSKKVVG NSTSLLSPYL HFGEISVRRV FQCARMKQII WARDKNGQGV ESAVLFLRGI GLRDYSRYIC
301: FNFPFTHEQS LLSHLRFFPW DADVEKFKAW RQGRTGYPLV DAGMRELWAT GWMHNRIRVI VSSFAVKFLL LPWKWGMKYF WDTLLDADLE CDIIGWQYIS
401: GSLPDGHELD RLDNPAIQGA KYDPEGEYIR QWLPELARLP TEWIHHPWDA PLTVLKASGV ELGTNYAKPI VDIDTARELL TKAISRTREA QIMIGAAPDE
501: IVADSFEALE AANTVKEHGY CPSSNDQQVP SDVRYSGSKR VKPAEEEEER EMKKLRGFNE VIREEEERGL FSTAESSSSS SVRSVFMVSH SCSLVSEGKN
601: LEGIQDSSDQ IATSLGKNG

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.