CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	secretory

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71211	Canola	cytosol	59.41	72.06
CDY71236	Canola	cytosol	59.05	70.99
Bra004444.1-P	Field mustard	cytosol	58.5	70.33
AT2G47590.1	Thale cress	cytosol	55.76	68.23
GSMUA_AchrUn_...	Banana	cytosol	14.99	57.75
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	42.23	52.5
VIT_07s0005g00590.t01	Wine grape	cytosol	43.51	52.42
Solyc09g075180.2.1	Tomato	cytosol	41.86	50.66
PGSC0003DMT400081378	Potato	cytosol	41.86	50.55
KRH69286	Soybean	plastid	40.59	47.74
TraesCS7B01G238500.1	Wheat	cytosol, plastid	34.92	42.54
HORVU7Hr1G080580.2	Barley	plastid	37.11	42.12
GSMUA_Achr5P21430_001	Banana	cytosol	34.73	41.67
TraesCS7A01G344600.1	Wheat	plastid	32.72	40.04
Zm00001d029105_P001	Maize	plastid	32.54	39.91
TraesCS7D01G334900.2	Wheat	plastid	32.36	39.69
EER94877	Sorghum	cytosol, plastid	32.18	39.37
Zm00001d047501_P001	Maize	plastid	31.81	39.01
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	32.54	38.78
GSMUA_AchrUn_...	Banana	plastid	21.57	36.31
CDX88137	Canola	plastid	21.02	20.25
CDX87114	Canola	golgi	19.2	20.04
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	20.66	19.65
CDY19825	Canola	plastid	21.02	18.95
CDX80473	Canola	plastid	21.02	14.09
CDY20139	Canola	cytosol, nucleus, plastid	14.08	13.73
CDY21853	Canola	mitochondrion, plastid	14.08	13.65
CDX89827	Canola	cytosol, mitochondrion	10.42	13.13
CDY18229	Canola	cytosol, mitochondrion	11.15	10.59
CDX86636	Canola	cytosol	11.7	10.34
CDY15503	Canola	cytosol	11.7	10.31
CDX75131	Canola	cytosol	10.97	8.42
CDY54706	Canola	cytosol	10.97	8.42

Protein Annotations

EnsemblPlants:CDX80119	EnsemblPlantsGene:GSBRNA2T00133024001	Gene3D:1.25.40.80	Gene3D:3.40.50.620	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:DNA_photolyase_N	InterPro:IPR006050	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	ncoils:Coil	PANTHER:PTHR11455
PANTHER:PTHR11455:SF2	PFAM:PF00875	PFscan:PS51645	ProteinID:CDX80119	ProteinID:CDX80119.1	SEG:seg
SUPFAM:SSF48173	SUPFAM:SSF52425	TMHMM:TMhelix	UniParc:UPI0004EE8E44	MapMan:35.1	:

Description

BnaA05g00370D

Coordinates

chrLK031819:+:1973799..1975987

Molecular Weight (calculated)

38049.4 Da

IEP (calculated)

7.793

GRAVY (calculated)

-0.204

Length

547 amino acids

Sequence
(BLAST)

001: MYSKERNFYT KKHYIIQISI LLLFKLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXEC LNSANDECLS LLPVYCFDPR DYGKSSSGFD KTGPFRAQFL IESVSELRKN LEARGSNLVV RVGKPEAVLV
301: ELAKEIGADA IYAHREVSHD EVKAEGKIES AMKEEGVEVN YFWGSTLYHL DDLPFKVEDL PSNYGAFKDK VQKLEIRKTI AALDQLKSLP SRGDVQLGDI
401: PSLLDLGINP SARTSQEGKP TMVGGETEAL TRLKSFAADC QARLAKGGNQ KGGNNSVFGA NFSCKISPWL AMGSISPRSM FDELKKTISA STTPSAPRNG
501: PGDTGLNWLM YELLWRDFFR FITKKYSSAK TQVEEAGPAT ACTGALA

Best Arabidopsis Sequence Match ( AT2G47590.1 )
(BLAST)

001: MDSSNVEENL NPETKSAEEQ NPLAIFHSSL PIASLSLTLF PSSTQFLKLF AHHPNKVKIP TQASSLTHLS LSSVSPFPSS RISFKSTIAA NPLQSPLSIV
101: PRRPVDPSSA AALRRAAVVW FRNDLRVHDN ECLNSANDEC VSVLPVYCFD PRDYGKSSSG FDKTGPFRAQ FLIESVSELR KNLQARGSNL VVRVGKPEAV
201: LVELAKEIGA DAVYAHREVS HDEVKAEGKI ETAMKEEGVE VKYFWGSTLY HLDDLPFKIE DLPSNYGAFK DKVQKLEIRK TIAALDQLKS LPSRGDVELG
301: DIPSLLDLGI SPTPRTSQEG KPTMVGGETE ALTRLKSFAA DCQARLSKGN QKGGNNSVFG ANFSCKISPW LAMGSISPRS MFDELKKTIS ASTTSTTPRN
401: GPGDTGLNWL MYELLWRDFF RFITKKYSSA KTQVEAGPAT ACTGAFA

Arabidopsis Description

PHR2At2g47590 [Source:UniProtKB/TrEMBL;Acc:Q058P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.