CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75131
CDY12145
CDY52540
CDY54706

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	CDY12145	AT2G32950.1	11509693
AT4G08920.1	CDY52540	AT2G32950.1	11509693
AT4G08920.1	CDY12145	AT2G32950.1	11752373
AT4G08920.1	CDY52540	AT2G32950.1	11752373
AT4G08920.1	CDX75131	AT4G08920.1	15805487
AT4G08920.1	CDY54706	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037880.1-P	Field mustard	cytosol	94.39	98.97
CDY54706	Canola	cytosol	98.74	98.74
AT4G08920.1	Thale cress	cytosol	90.6	94.86
VIT_18s0001g05680.t01	Wine grape	cytosol	77.0	79.45
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	64.66	79.07
Solyc12g057040.1.1	Tomato	mitochondrion	64.52	78.9
KRH18908	Soybean	cytosol	75.04	78.56
KRH16735	Soybean	cytosol	74.89	78.41
KRH62344	Soybean	cytosol	74.75	78.27
KRH53063	Soybean	cytosol	74.75	78.15
Solyc04g074180.2.1	Tomato	cytosol	74.19	77.91
Zm00001d028434_P001	Maize	cytosol	18.09	70.49
Zm00001d015045_P001	Maize	cytosol	18.37	70.05
Zm00001d005288_P001	Maize	cytosol	16.83	69.77
Zm00001d015419_P001	Maize	cytosol	16.13	69.7
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	66.76	68.19
Os04t0452100-02	Rice	cytosol	65.5	66.71
TraesCS2D01G317500.1	Wheat	cytosol	64.52	66.09
TraesCS6D01G187200.1	Wheat	cytosol	64.24	65.62
TraesCS6A01G203300.1	Wheat	cytosol	64.1	65.47
KXG30485	Sorghum	cytosol	64.8	65.35
Zm00001d016915_P002	Maize	cytosol, plastid	64.38	64.92
TraesCS2A01G340000.1	Wheat	cytosol	64.8	64.89
KXG26438	Sorghum	cytosol	64.24	64.51
TraesCS2B01G337900.1	Wheat	cytosol	64.38	64.47
Zm00001d003477_P001	Maize	cytosol	61.99	64.24
Zm00001d050850_P001	Maize	cytosol	63.53	64.07
Os02t0573200-01	Rice	cytosol	64.52	64.07
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	63.96	63.87
TraesCS6B01G224100.2	Wheat	cytosol	61.15	63.74
HORVU2Hr1G079220.2	Barley	cytosol	63.25	63.34
CDX89827	Canola	cytosol, mitochondrion	35.9	58.99
CDY18229	Canola	cytosol, mitochondrion	44.18	54.69
CDX86636	Canola	cytosol	44.74	51.53
CDY15503	Canola	cytosol	44.46	51.05
CDY20139	Canola	cytosol, nucleus, plastid	20.76	26.38
CDY21853	Canola	mitochondrion, plastid	20.76	26.24
CDX88137	Canola	plastid	17.67	22.18
CDX87114	Canola	golgi	16.27	22.14
CDX87110	Canola	cytosol, mitochondrion, peroxisome, plastid	17.53	21.74
CDY19825	Canola	plastid	18.09	21.25
CDX80473	Canola	plastid	17.95	15.69
CDY71236	Canola	cytosol	9.96	15.6
CDY71211	Canola	cytosol	9.82	15.52
CDX80119	Canola	endoplasmic reticulum	8.42	10.97

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	GO:A0A078CDH7	EnsemblPlants:CDX75131
ProteinID:CDX75131	ProteinID:CDX75131.1	ncoils:Coil	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd
InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674
GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785
GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	EnsemblPlantsGene:GSBRNA2T00118877001	InterPro:IPR006050	InterPro:IPR014729
PFAM:PF00875	PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691
PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
TIGRFAMs:TIGR02766	UniParc:UPI0004EE47D9	SEG:seg	:	:	:

Description

BnaC09g25510D

Coordinates

chrLK031803:-:657133..660342

Molecular Weight (calculated)

80387.8 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.486

Length

713 amino acids

Sequence
(BLAST)

001: MSNSCSGGGG CSIVWFRRDL RVEDNPALAA AVRAGPVIAV FVWAPEEEGH YQPGRVSRWW LKNSLAQLDS SLRSLGTCLI TKRSTDSVAS LLEVVKSTGA
101: SQIFFNHLYD PLSLVRDHRA KDALTAEGIA VKSFNADLLY EPWEVTDELG RPFSMFAAFW ERCLSMPYDP ESPLLPPKKI ISAGDVSKCV ADTLIFEDES
201: EKGSNALLAR AWSPGWSNAD KALTTFINGP LIEYSKNRRK ADSATTSFLS PHLHFGEVSV RKVFHLLRIK QVAWANEGNQ AGEESVNLFL KSIGLREYSR
301: YISFNHPYSH ERPLLGHLKF FPWAVDENYF KAWRQGRTGY PLVDAGMREL WATGWLHDRI RVVVSSFFVK VLQLPWRWGM KYFWDTLLDA DLESDALGWQ
401: YITGTLPDSR EFDRIDNPQF EGYKFDPNGE YVRRWLPELS RLPTEWIHHP WNAPESVLQA AGIELGSNYP RPIVGLDEAK ARLHEALSQM WQLEAASRAA
501: IENGTEEGLG DSTEFVEAPI EFPRDITMEE TEPTRLNPVR RYEDQMVPSI TTSLIRPEED EESSLNLRNS VGDSRAEVPR NMVNTNQAQQ QEARAEQVSN
601: QVTAMIPEFN IRIVAENTEE STAESSSSGR RERDGGIVPE WSGYSEQFAS EENGIGGGST TSSYLQNHHE IVNWRRLSQT GVDFNLQKTF CGPSDFTGNE
701: AQGEELHKDC NSG

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.