Factsheet for Os02t0573200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0573200-01
Os02t0771100-01
Os04t0452100-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	Os02t0771100-01	AT2G32950.1	11509693
AT4G08920.1	Os02t0771100-01	AT2G32950.1	11752373
AT4G08920.1	Os02t0573200-01	AT4G08920.1	15805487
AT4G08920.1	Os04t0452100-02	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30485	Sorghum	cytosol	87.05	88.4
Zm00001d015419_P001	Maize	cytosol	20.06	87.27
Zm00001d016915_P002	Maize	cytosol, plastid	85.38	86.7
Zm00001d005288_P001	Maize	cytosol	20.61	86.05
Zm00001d028434_P001	Maize	cytosol	21.87	85.79
Zm00001d050850_P001	Maize	cytosol	84.4	85.71
Zm00001d015045_P001	Maize	cytosol	22.28	85.56
TraesCS6D01G187200.1	Wheat	cytosol	82.87	85.24
TraesCS6A01G203300.1	Wheat	cytosol	82.45	84.81
Os04t0452100-02	Rice	cytosol	81.75	83.86
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	81.62	82.07
TraesCS6B01G224100.2	Wheat	cytosol	77.72	81.58
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	57.38	70.67
Solyc04g074180.2.1	Tomato	cytosol	66.57	70.4
Solyc12g057040.1.1	Tomato	mitochondrion	57.1	70.33
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	68.25	70.2
VIT_18s0001g05680.t01	Wine grape	cytosol	67.55	70.19
KRH16735	Soybean	cytosol	66.16	69.75
KRH18908	Soybean	cytosol	66.02	69.6
KRH62344	Soybean	cytosol	65.88	69.46
KRH53063	Soybean	cytosol	65.32	68.77
Bra037880.1-P	Field mustard	cytosol	63.79	67.35
AT4G08920.1	Thale cress	cytosol	63.65	67.11
CDX75131	Canola	cytosol	64.07	64.52
CDY54706	Canola	cytosol	63.93	64.38
Os02t0625000-01	Rice	cytosol	44.29	48.85
Os02t0204400-00	Rice	plastid	20.75	27.04
Os06t0661800-01	Rice	plastid	18.38	22.76
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	11.56	18.08

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	EntrezGene:4329738	ProteinID:BAD17529.1
ProteinID:BAF09114.1	ProteinID:BAS79359.1	ncoils:Coil	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd
InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674
GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785
GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729	EnsemblPlantsGene:Os02g0573200
EnsemblPlants:Os02t0573200-01	PFAM:PF00875	PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394
ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	UniProt:Q6YXC2	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI000035AF2C	RefSeq:XP_015625401.1	SEG:seg

Description

cryptochrome 1a, Blue-light-receptor cryptochrome 1Similar to Cryptochrome 1. (Os02t0573200-01);Cryptochrome 1a, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os02t0573200-02)

Coordinates

chr2:+:21976544..21980274

Molecular Weight (calculated)

80221.4 Da

IEP (calculated)

5.190

GRAVY (calculated)

-0.400

Length

718 amino acids

Sequence
(BLAST)

001: MSASPSSMSG AGAGEAGVRT VVWFRRDLRV EDNPALAAAA RAAGEVVPVY VWAPEEDGPY YPGRVSRWWL SQSLKHLDAS LRRLGASRLV TRRSADAVVA
101: LIELVRSIGA THLFFNHLYD PLSLVRDHRV KALLTAEGIA VQSFNADLLY EPWEVVDDDG CPFTMFAPFW DRCLCMPDPA APLLPPKRIA PGELPARRCP
201: SDELVFEDES ERGSNALLAR AWSPGWQNAD KALAAFLNGP LMDYSVNRKK ADSASTSLLS PYLHFGELSV RKVFHQVRMK QLMWSNEGNH AGDESCVLFL
301: RSIGLREYSR YLTFNHPCSL EKPLLAHLRF FPWVVDEVYF KVWRQGRTGY PLVDAGMREL WATGWLHDRI RVVVSSFFVK VLQLPWRWGM KYFWDTLLDA
401: DLESDALGWQ YISGSLPDGR ELDRIDNPQL EGYKFDPHGE YVRRWLPELA RLPTEWIHHP WDAPESVLQA AGIELGSNYP LPIVELDAAK TRLQDALSEM
501: WELEAASRAA MENGMEEGLG DSSDVPPIAF PPELQMEVDR APAQPTVHGP TTAGRRREDQ MVPSMTSSLV RAETELSADF DNSMDSRPEV PSQVLFQPRM
601: EREETVDGGG GGGMVGRSNG GGHQGQHQQQ QHNFQTTIHR ARGVAPSTSE ASSNWTGREG GVVPVWSPPA ASGPSDHYAA DEADITSRSY LDRHPQSHTL
701: MNWSQLSQSL TTGWEVEN

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.